rs220217523 SNP Detail

Summary

• ID
  rs220217523
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:49736587 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTCTCGAC CCTACTGCTC
  CTCTGAGCCT CCACCACCCT AGTTCAGTGC TTGAAACCAG AGTCACAGCT CTCTTCAAAT
  TCTGCGGAGA TTCATGGGGC CTCCTAGTCT CTTGATCTTC CTATACGCAG AGTCCTTCTC
  CCTGGCTCCT CCTTGGCATC TTGTGACTAC AGCTCTACCA CCATAGACAC CACTTGTCAA
  Y
  TACTGTCTCC ATTTTTCCAA TCCCTTATTG ACCAGTCCTC AGCCTAACCT GTTCGTAGCT
  TCCCTCAGTG TGTTCAACGT CCCTGTCTCA CTTGCAGCCT CTCTATCAAA ACACAGAGTA
  GTCAGAATCC CAAATTCTGA GTTTTCCAAA CATCTGATTC ACCTCAGACC TTCTGGAACC
  TACTTGAGAG CCAGAGGTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383316498	MGP_WTSI_11_49659262	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220217523					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383316498	MGP_WTSI_11_49659262	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:49736587 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2801	CpG island 2801	485 bp proximal
Gm74054	predicted gene, 74054	within coordinates
Mapk9	mitogen-activated protein kinase 9	991 bp upstream
Rr446291	regulatory region 446291	301 bp distal
Rr446292	regulatory region 446292	743 bp distal
Rr446293	regulatory region 446293	590 bp distal
Rr446294	regulatory region 446294	within coordinates
Rr446295	regulatory region 446295	624 bp proximal
Rr446296	regulatory region 446296	767 bp proximal
Rr446297	regulatory region 446297	1004 bp proximal
Tssr3485	transcription start site region 3485	1178 bp upstream
Tssr101198	transcription start site region 101198	972 bp upstream
Tssr101199	transcription start site region 101199	1004 bp upstream
Tssr101200	transcription start site region 101200	1045 bp upstream
Tssr101201	transcription start site region 101201	1124 bp upstream