rs220219195 SNP Detail

Summary

• ID
  rs220219195
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:84495778 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGAGGGGC GGGCAGCCTG
  GGCGTCCCGA GCGGCGTGGG GCGTGCGGCC CCCTTGGGTC CTGCTGGGTG GCGGCGGCGG
  GAATACCTCG CTCTCCTCCG CCTCTACGAG TATAACGTTG GAAAGCACGT ACACGTTCTA
  TCTGCCCAGG ACGGGGCTAC CCGGGACGTG CCTTTCCTCG CCCGATCCGG CTGGGCCGAC
  Y
  GGCGCAGCTT TTATCTCCCA TCCTAGTTTT TGCTCCGCGC GCGGGAACAG CAAAACAGCA
  ATGGTGCGCT TGGCCAAGTT GCTTGGGACT AGGAACGGGG GTCGCGGCCT GTCCCGTAGG
  TGGCAGCTCC GGCCCGGCTG CACGTGGAGA CGCAGTAGGG GTGGGGGCGG GAGCGGCCAG
  CCTGGAGGAG CATTGGCGCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss399282295	MGP_WTSI_17_84587690	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220219195					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss399282295	MGP_WTSI_17_84587690	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:84495778 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9565	CpG island 9565	1098 bp distal
Cpgi9566	CpG island 9566	within coordinates
Gm36279	predicted gene, 36279	1530 bp upstream
Gm56881	predicted gene, 56881	within coordinates
Rr333589	regulatory region 333589	1023 bp proximal
Rr340271	regulatory region 340271	within coordinates
Rr405496	regulatory region 405496	176 bp downstream
Thada	thyroid adenoma associated	1726 bp downstream
Tssr146045	transcription start site region 146045	1233 bp downstream
Tssr146046	transcription start site region 146046	254 bp upstream
Tssr149656	transcription start site region 149656	1968 bp upstream
Tssr149657	transcription start site region 149657	1738 bp upstream
Tssr149658	transcription start site region 149658	1695 bp upstream
Tssr149659	transcription start site region 149659	1659 bp upstream
Tssr149660	transcription start site region 149660	1633 bp upstream
Tssr149661	transcription start site region 149661	1570 bp upstream
Tssr149662	transcription start site region 149662	1530 bp upstream
Tssr149663	transcription start site region 149663	1461 bp upstream
Tssr149664	transcription start site region 149664	1418 bp upstream
Tssr149665	transcription start site region 149665	1346 bp upstream
Tssr149666	transcription start site region 149666	1284 bp upstream
Tssr149667	transcription start site region 149667	1184 bp upstream
Tssr149668	transcription start site region 149668	1160 bp upstream
Tssr149669	transcription start site region 149669	1098 bp upstream
Tssr149670	transcription start site region 149670	593 bp upstream
Tssr149671	transcription start site region 149671	451 bp upstream
Tssr149672	transcription start site region 149672	396 bp upstream
Zfp36l2	zinc finger protein 36, C3H type-like 2	403 bp upstream