rs220223043 SNP Detail

Summary

• ID
  rs220223043
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:15148406 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATCAAAAGC TAGAAGAGAA
  GGTTAATGAT AGTAATTACA ACTTAGGCAG GGCAGGTGGT GGTGGTGGGG AGAATAATAG
  GGAAGGCAGC GGGCACCAAA AGAGAAAAAA AAATCATTAT GATAAAAGAG ACCTTGGCTT
  CTGTTGTAAA ATAAGAAAAC GAATACGTTC AAAGAAATTG TTTTTGAAGG TAGCTGGGAG
  Y
  AGCTGGAGGG GCATCACAAT GTCTAAGGCT TCCGTCAGCG CTCCCAGCAC AAGGGAGAGA
  GAGTGCCTGC CAGTAAATTG GGCAGCAGGG ATGAGACCGG AATCAAGTCC TACACTGCTC
  AATGGGAGAC TCTCCATTCC GGGCAGAAGC CCTAGGTTCT GGGAAGTCGA ACTTTGGGGG
  CTCCTTAAAG CTTATAATCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321047407	CHEV_4_15075553	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220223043					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:15148406 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14054	CpG island 14054	370 bp proximal
Necab1	N-terminal EF-hand calcium binding protein 1	within coordinates
Rr100616	regulatory region 100616	within coordinates
Tssr40968	transcription start site region 40968	535 bp downstream
Tssr40969	transcription start site region 40969	555 bp downstream
Tssr40970	transcription start site region 40970	571 bp downstream
Tssr40971	transcription start site region 40971	605 bp downstream
Tssr40972	transcription start site region 40972	645 bp downstream
Tssr40973	transcription start site region 40973	1349 bp downstream