rs220223556 SNP Detail

Summary

• ID
  rs220223556
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:117643013 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ACTCTCCTT GTAGTTTTTC ATCCATGTTA
  AACTCTTCGA GTATTTACGT TGATTTACAT TTCTGTGGCT ATTGGCTAAA ACACCCATTT
  ATGGGCCAAT CGAATTTGTT TTGCGTTTCT ATTTTCTTAT GCTCCCttat gtgtaagagc
  R
  cgctttcctg catgtactca atgtgtgtac ctggggccca aatgaggcca aaagatgtta
  ggtcccctcc atctggagtt atagacgtgt gggttgtcat ataagcacag agatttgaaa
  atgcatcctc tgggtgctct tagctgctag                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323499647	CHEV_10_117244164	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220223556					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:117643013 () rs orientation: forward

Symbol	Name	Function Class
Gm67590	predicted gene, 67590	within coordinates
Rr218193	regulatory region 218193	1613 bp distal
Rr218194	regulatory region 218194	788 bp proximal
Rr218195	regulatory region 218195	1387 bp proximal
Rr221673	regulatory region 221673	633 bp distal
Rr385360	regulatory region 385360	364 bp downstream
Rr402273	regulatory region 402273	973 bp upstream