rs220228173 SNP Detail

Summary

• ID
  rs220228173
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:114963478 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGCTGGGAA CTGAACCCAG
  GTCCTCTGGA AGAGCAGTAA ATGCTCTTAA CCGCTGACCA TCTCATAGCC CCTTTTATAC
  AATCTTAAAA TCATACTGGC TGATCTCACT CTTGCTATGA TGGTGACATG ACGTAAAATT
  AATCATTTTA GCTACTTTTT TTTTTTTTTT TTGATTTTTT TAGCGAGACA GGGTTTCTCT
  R
  TATGGCTATG GCTGTCCTGG AACTCACTTT GTAGACCAGG CTGGCCTTGA ACTCAGAAAT
  CCTTAGCTAC TTTTTAATAC AATTCAGCTG TATTAGGCTA AATATAAACC AACACATGTA
  GACCATTTCC AGAACCTTCT CATCATCTCA AACAGAAACT CCAAGCCCAT TAGACCATAC
  ATCAACTATC TCCCCTGTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366343633	MGP_WTSI_5_115275426	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220228173					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366343633	MGP_WTSI_5_115275426	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:114963478 () rs orientation: forward

Symbol	Name	Function Class
2610524H06Rik	RIKEN cDNA 2610524H06 gene	1949 bp upstream
Cpgi16338	CpG island 16338	1752 bp distal
Cpgi16339	CpG island 16339	872 bp proximal
Gm46920	predicted gene, 46920	within coordinates
Gm57857	predicted gene, 57857	1949 bp upstream
Gm72061	predicted gene, 72061	within coordinates
Gm72071	predicted gene, 72071	within coordinates
Gm72099	predicted gene, 72099	1934 bp downstream
Rr108236	regulatory region 108236	478 bp distal
Rr124118	regulatory region 124118	877 bp distal
Rr124119	regulatory region 124119	522 bp proximal
Rr399275	regulatory region 399275	880 bp upstream
Tssr52734	transcription start site region 52734	1960 bp upstream
Tssr52735	transcription start site region 52735	1942 bp upstream
Tssr52736	transcription start site region 52736	1928 bp upstream
Tssr52737	transcription start site region 52737	915 bp downstream