rs220229534 SNP Detail

Summary

• ID
  rs220229534
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:142619771 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCAGGACAT GGTTGGTGGA
  TATGGCCAAC CCCCTTGGCA CATAGCTGTT GGTCATGTGG GCTAGGCCTG GGCTTGCTGG
  TCAAGGCTCT GACCTCTTCT TTCCCCTAGT TCTTCACCTG CCTTGTGATC CTGTTTGCCT
  GTGAGGTGGC TGCAGGCATC TGGGGCTTCG TAAACAAAGA CCAGGTAAGC CTAGGTTCAC
  S
  GAGTGGGAGA TATGCCCTCT GCCCTCCAAC AGATGTGGGT TGCTCTGAGC CCATAGTTAT
  AGGGTGCTTT TTGAATTTCT TGGACCTGCT GCTTGGGTGG GGGCAGGGTC TTGGGAGCTC
  AGTGGAAGAG GTGGCATCAG GCTGAGCCCA TCGGGAAGTT GAGTGCTCTT GGGCGTAGCC
  CCGACACTGT ATGTGACTAT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373462638	MGP_WTSI_7_150251939	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220229534					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373462638	MGP_WTSI_7_150251939	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:142619771 () rs orientation: forward

Symbol	Name	Function Class
Cd81	CD81 antigen	within coordinates
Tssr70273	transcription start site region 70273	1075 bp downstream
Tssr70274	transcription start site region 70274	1057 bp downstream
Tssr70275	transcription start site region 70275	271 bp downstream
Tssr70276	transcription start site region 70276	240 bp downstream
Tssr70277	transcription start site region 70277	85 bp downstream
Tssr70278	transcription start site region 70278	696 bp upstream
Tssr70279	transcription start site region 70279	1331 bp upstream
Tssr70280	transcription start site region 70280	1367 bp upstream
Tssr70281	transcription start site region 70281	1501 bp upstream