rs220230856 SNP Detail

Summary

• ID
  rs220230856
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:73000897 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTAGCTTG GGAGGTAGAG
  GCAGGAGGAT CCTAAGTTTA AGGACAGCCT CACAACACAA CAAATTTGAG GAAAGCCTGG
  GCTACATTAG ACCCTGTCTC CAAAAAAAAA AAAAAAAAAA AAGGAGAGGA AGGGAGAATG
  GGAGGGGGCT TTAATTTCTC TGGTGTTGGG AGTGTTAAGT TTCAACACTG CCCCCTCCCC
  M
  CCCCACCCCT ACACAAAAGC AGACCTGGCT TCCAGATTCT TCCAGAATCT CTCAGTCCCT
  TCCTGTGTGG TGGCATACAC CACCCTCTAC CCTGAACTCT CCAGCCCAGG GACTCTTCCC
  TACATAATCC AGACATTTTG GATACCTGCT CCACTTTTGT ACCTTTGTCC TCCTCTCTCC
  CTCCCCCCCC ACCACACACA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	RF/J	RIIIS/J	SEA/GnJ	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss378032772	MGP_WTSI_9_72941422	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	C	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	RF/J	RIIIS/J	SEA/GnJ	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs220230856					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	C	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378032772	MGP_WTSI_9_72941422	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:73000897 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22027	CpG island 22027	1667 bp proximal
Rab27a	RAB27A, member RAS oncogene family	within coordinates
Rr197297	regulatory region 197297	1297 bp distal
Rr206717	regulatory region 206717	1103 bp proximal
Rr212246	regulatory region 212246	1528 bp distal
Tssr86085	transcription start site region 86085	347 bp upstream
Tssr86086	transcription start site region 86086	1211 bp upstream
Tssr86087	transcription start site region 86087	1229 bp upstream