rs220235565 SNP Detail

Summary

• ID
  rs220235565
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:96140698 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAACTACTG TCTTTCCCCG
  GGCCGCCCAA TCCTTCACAA ACTCCGGAGG AAAGAAAAAT AATAAACAGG ACATTCACTT
  CCCTTTAGGA CCTCCCTTTA AAAAGAGACT CTAAAAAGGT CTTTTATGAT ATTATAAATA
  CATTTTTGTT GTTGTTGCTA TTTCTTTGTT GTTGTTGTTT TTTTTTTTTT TGAGACGGGG
  K
  GGGGGGGGGT TTCTCTGCAT GACTCCAGCC GTCCTGGAAC TTGCTCTGCA GACCAGAGTT
  GCCTCAAACT CACAGAGATC TGCCTGCCTC TGCCTCTCTA GTGAGCACTG GGATTAAAGG
  AGTGTGCTAT CACTGCCCAG TGAATAAATT GTTTTTACTA AGATGACATT TTCAAAGGGA
  GGAAGAAGAG AGGAAGGGAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/10SnJ	CAST/EiJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	SWR/J
ss381370440	MGP_WTSI_10_95767470	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	G	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/10SnJ	CAST/EiJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	SWR/J
rs220235565					SNP	T	T	T	G	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss381370440	MGP_WTSI_10_95767470	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:96140698 () rs orientation: forward

Symbol	Name	Function Class
Gm40748	predicted gene, 40748	665 bp downstream
Gm48427	predicted gene, 48427	600 bp upstream