rs220239649 SNP Detail

Summary

• ID
  rs220239649
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:116509246 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAAAATCT TGCCTCTGCA
  AACCCCATTT TAGAAAGTTA CTGATCTTTC ACTCAGTACC TTGCACTTTA GCCCTGTGCA
  AAAGACTTCA TAAATATGAG CTGGGGCCGT ATAGCTAAAT TAATACAGTG CTTGCTTAAC
  ATAAAGTTCT GGGTTCAAAA TCCCAGCACG GCATAAAATT GAGTCGTTAT CCCAGCACTT
  S
  GGAGGTGGAA GCAAGGAGAA TCAGAAGATT CAGTTTTTCT TGCCTCCTAT ACATTGACTT
  TGAGGCCAGC CTGAGATTTA TGATCCCCTA TCTAAAAGGA AAACATTTGA AGATGGAGAG
  AAGGGGTGCC GCTTTTTCAG AGAACCCAAG TTCAGTACCA GCATTCATGT CAGGAGGTTC
  TCAACCACCT GTAACCCCAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321277677	CHEV_4_116324654	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220239649					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:116509246 () rs orientation: forward

Symbol	Name	Function Class
Akr1a1	aldo-keto reductase family 1, member A1	375 bp upstream
Cpgi14637	CpG island 14637	342 bp distal
Rr597944	regulatory region 597944	380 bp distal
Rr597945	regulatory region 597945	362 bp distal
Rr597946	regulatory region 597946	within coordinates
Tssr38539	transcription start site region 38539	514 bp downstream
Tssr42908	transcription start site region 42908	1562 bp upstream
Tssr42909	transcription start site region 42909	640 bp upstream
Tssr42910	transcription start site region 42910	623 bp upstream
Tssr42911	transcription start site region 42911	603 bp upstream
Tssr42912	transcription start site region 42912	500 bp upstream
Tssr42913	transcription start site region 42913	478 bp upstream
Tssr42914	transcription start site region 42914	413 bp upstream
Tssr42915	transcription start site region 42915	384 bp upstream
Tssr42916	transcription start site region 42916	367 bp upstream