rs220240822 SNP Detail

Summary

• ID
  rs220240822
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:87840777 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTATACATTA TTGACTTGCA
  TTTTCAACTC CATATTGAAC ACTTATAAAA TTCCTGTAAT ATAACTGAGA AGCATATAGA
  GTCCATGGGT CGAATTCAAA TGAATGCCAT ATAATACATA GAATAAATAA AAGAATACAT
  TTTCTTTTCT TCCATGTAGA TTAATTCAGA AATATATCAT TTTTGTAGCA TGATCCAAAG
  R
  TGAAAAGATT TGTACATTTC CAGTTTCAGT CAGTTCTGTG AAAGAAAGAT GTATAATCAT
  TTCTGTTGTG TTAAATCAGT GATTCCCAAC ATTCCCTTTA ATACTGCTCC TCGTGTTTTG
  GTGACCCCCC AACCATAAAA TTATATACTT TTTTATTTTA TTGTTGCTTC ATAAATGTAC
  TTTTCTACTG TTATAAATTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss365777254	MGP_WTSI_5_88121943	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220240822					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss365777254	MGP_WTSI_5_88121943	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:87840777 () rs orientation: forward

Symbol	Name	Function Class
Csn2	casein beta	within coordinates
D5Mit12	DNA segment, Chr 5, Massachusetts Institute of Technology 12	944 bp proximal
D5Mit16	DNA segment, Chr 5, Massachusetts Institute of Technology 16	950 bp proximal
D5Mit16.1	DNA segment, Chr 5, Massachusetts Institute of Technology 16.1	1050 bp proximal
D5Mit16.2	DNA segment, Chr 5, Massachusetts Institute of Technology 16.2	748 bp proximal
Tssr1529	transcription start site region 1529	1636 bp upstream
Tssr46883	transcription start site region 46883	1583 bp upstream
Tssr46884	transcription start site region 46884	1596 bp upstream
Tssr46885	transcription start site region 46885	1624 bp upstream
Tssr46886	transcription start site region 46886	1652 bp upstream
Tssr46887	transcription start site region 46887	1669 bp upstream
Tssr46888	transcription start site region 46888	1738 bp upstream
Tssr46889	transcription start site region 46889	1787 bp upstream
Tssr46890	transcription start site region 46890	1802 bp upstream
Tssr46891	transcription start site region 46891	1846 bp upstream
Tssr46892	transcription start site region 46892	1850 bp upstream
Tssr46893	transcription start site region 46893	1878 bp upstream
Tssr46894	transcription start site region 46894	1925 bp upstream
Tssr46895	transcription start site region 46895	1948 bp upstream
Tssr51613	transcription start site region 51613	239 bp upstream
Tssr51614	transcription start site region 51614	176 bp upstream
Tssr51615	transcription start site region 51615	120 bp upstream
Tssr51616	transcription start site region 51616	86 bp upstream
Tssr51617	transcription start site region 51617	77 bp upstream
Tssr51618	transcription start site region 51618	1612 bp downstream
Tssr51619	transcription start site region 51619	1650 bp downstream
Tssr51620	transcription start site region 51620	1659 bp downstream
Tssr51621	transcription start site region 51621	1668 bp downstream
Tssr51622	transcription start site region 51622	1706 bp downstream
Tssr51623	transcription start site region 51623	1731 bp downstream
Tssr51624	transcription start site region 51624	1749 bp downstream
Tssr51625	transcription start site region 51625	1755 bp downstream
Tssr51626	transcription start site region 51626	1765 bp downstream
Tssr51627	transcription start site region 51627	1780 bp downstream
Tssr51628	transcription start site region 51628	1821 bp downstream
Tssr51629	transcription start site region 51629	1913 bp downstream