rs220245145 SNP Detail

Summary

• ID
  rs220245145
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:151958783 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTAACTGTC CCTAAACACA
  CACACAAACA AAACAAAAAA AAACCCTTGG ATATTTGGTC ATGTTTCTTT CTCTTGCAAT
  CTCATTTAGT TCTCAAGGCT CTCACCTGTT AGCTTTGGGA CATAAGCCTT TTCTATTTTA
  GGAGAACTTT CTTCCTCATC ATCAGAAGCA AGCATTTCTT TAATCTAGGT GGTTGAATAA
  R
  TAAATATGAA CACGTTTCAA AATTAGACTA GATTATACTA GAATAGCCCC TCTGCCCCAC
  ACTGCAGAAG AACCCTCTAG GGTCCCGTGG GTTCCTGAAA GCACCGACAA TGCTAAGTCC
  TGTGCATGCT GTTTTTCTTG TATGAAAAAT ATATACATAT AAAACAATAT ATATTCGGCA
  CAGTAAGAGA CAAAGAACAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss360262505	MGP_WTSI_3_151916110	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220245145					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss360262505	MGP_WTSI_3_151916110	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151958783 () rs orientation: forward

Symbol	Name	Function Class
Gm43185	predicted gene 43185	343 bp upstream
Nexn	nexilin	Intron
Tssr1100	transcription start site region 1100	233 bp downstream
Tssr32404	transcription start site region 32404	462 bp upstream
Tssr36193	transcription start site region 36193	297 bp upstream
Tssr36194	transcription start site region 36194	183 bp upstream
Tssr36195	transcription start site region 36195	70 bp upstream
Tssr36196	transcription start site region 36196	43 bp upstream
Tssr36197	transcription start site region 36197	12 bp upstream
Tssr36198	transcription start site region 36198	534 bp downstream
Tssr36199	transcription start site region 36199	549 bp downstream
Tssr36200	transcription start site region 36200	573 bp downstream
Tssr36201	transcription start site region 36201	609 bp downstream
Tssr36202	transcription start site region 36202	655 bp downstream