rs220245592 SNP Detail

Summary

• ID
  rs220245592
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121616395 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAGGGAGAAG GAGGGAGGAG GGAGGAGGTG GGGGAGAACT
  GCAAAATGAT TCTTAGCTCA CAGGCTCTAT AAACACAGGA GGTGAGGCGG ATTTGGCTGG
  W
  CAGCAGTAAT TTGCTATTTC ATTAGGGACA TGAAAGAACT GGCTAGGAAC CTGCTGCCAG
  GAGCAACCAC TGACCTAGAT TTCTTTTGTT TTCCACCTC                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320906102	CHEV_3_121525664	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220245592					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121616395 () rs orientation: forward

Symbol	Name	Function Class
D3Mit347	DNA Segment, Chr 3 Massachusetts Institute of Technology 347	319 bp proximal
Gm42776	predicted gene 42776	698 bp downstream
Rr584177	regulatory region 584177	1929 bp distal
Rr584178	regulatory region 584178	724 bp distal
Tssr31460	transcription start site region 31460	1182 bp upstream