rs220245753 SNP Detail

Summary

• ID
  rs220245753
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:128177318 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAAAGTGGT ACCCCAGAGC
  ATTACCTTCT GAGGCCACAA GCCAGCGAGC CCTAGACTAA CGGTGCCTAA GGCCACTTTA
  GCGGACAATC CCAGATTGAT CCTTCAGGAG GCGACCAGTA ACGGTCCCCG GAGGGGGAGG
  GGTGACTCTA CTGTCTGGGA AAGGGGTTCC GCTCCGAGCG GCTGACAGTG CCTTCCTGAG
  Y
  CCGACGGGGT CTCTACGGCC GATCCGCTGC ACCTACAACC TCTCCAGGGC CGCCCTGGCC
  TCCTCTCCCC TGGACTACGA GCTCCGTGTG CGAGAGGCCG CGTTACGAGT GGACGCTCCG
  AAATGCGACT CTGCTTCCTT GCTGGGTTAT CACCGCTGCC CGGAGCCACC GGCTTCCCAC
  CCCTACCCAG TGGAAGCTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370021621	MGP_WTSI_6_128150373	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220245753					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370021621	MGP_WTSI_6_128150373	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:128177318 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18048	CpG island 18048	within coordinates
Gm4691	predicted gene 4691	1795 bp downstream
Gm10010	predicted gene 10010	within coordinates
Gm66766	predicted gene, 66766	within coordinates
Gm68827	predicted gene, 68827	1824 bp downstream
Rr399953	regulatory region 399953	152 bp upstream
Rr639207	regulatory region 639207	41 bp distal
Rr639208	regulatory region 639208	within coordinates
Rr639209	regulatory region 639209	217 bp proximal
Rr639210	regulatory region 639210	364 bp proximal
Rr639211	regulatory region 639211	1141 bp proximal
Tssr63410	transcription start site region 63410	197 bp downstream
Tssr63411	transcription start site region 63411	219 bp downstream
Tssr63412	transcription start site region 63412	221 bp downstream
Tssr63413	transcription start site region 63413	243 bp downstream
Tssr63414	transcription start site region 63414	283 bp downstream