rs220255972 SNP Detail

Summary

• ID
  rs220255972
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:19244052 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTATGACCCA AGCTGGCTTC
  TGGTGATCCT CCTGCCTCTG CCTGAAAAGT ACTAGGATTA TGGGCCCTCC CGTGTCTGGT
  TTGCACATTG CGCCTCCAGT GTGGTACAGT CAGCCTCTGC ATCCCAGAGT GCTGCATCAG
  TGGTGGCGCA CGCCTTTAAT CCCAGCACTT GGGAGGCAGA GGCAGGCGGA TTTTTGAGTT
  Y
  GAGGCCAGCC TAGTCTATAG AGTGAATTCC AGGACAGCCA GGGCTATACA GAGAAACCGT
  GTCTTAAAAA AAAAAAAAAA AAAAAACAAC AAAGGATATC TCATCTCACT TATATACTGT
  TCCACTCTCA CACATGCGAT CCTGCTGCCT GCACTTCCCA AGGGCTGGAA TTGGATGCAG
  AGATGTCGTT TTAGTTAATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370750971	MGP_WTSI_7_20095476	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	T	T	T	T	T	C	T	C	C	T	T	T	T	T	T	T	T	C	T	C	T	T	T	T	C	T	T	C	T	C	C	T	C	T	C	T	C	T	T	C	T	T	C	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220255972					SNP	C	C	T	T	T	T	T	C	T	C	C	T	T	T	T	T	T	T	T	C	T	C	T	T	T	T	C	T	T	C	T	C	C	T	C	T	C	T	C	T	T	C	T	T	C	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370750971	MGP_WTSI_7_20095476	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:19244052 () rs orientation: forward

Symbol	Name	Function Class
Bloc1s3	biogenesis of lysosomal organelles complex-1, subunit 3	1757 bp upstream
Cpgi18495	CpG island 18495	995 bp distal
Gm74038	predicted gene, 74038	1991 bp downstream
Rr155320	regulatory region 155320	1949 bp proximal
Rr167175	regulatory region 167175	51 bp distal
Rr400150	regulatory region 400150	1304 bp downstream
Trappc6a	trafficking protein particle complex 6A	within coordinates
Tssr64864	transcription start site region 64864	1386 bp downstream
Tssr64865	transcription start site region 64865	1373 bp downstream
Tssr64866	transcription start site region 64866	1356 bp downstream
Tssr70925	transcription start site region 70925	1823 bp upstream
Tssr70926	transcription start site region 70926	1750 bp upstream
Tssr70927	transcription start site region 70927	1738 bp upstream