rs220256252 SNP Detail

Summary

• ID
  rs220256252
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:29782089 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGCAGCTT TTTTTTGGGT
  CACCTGATTG GAGATGACAG GTAGGCTTTC AGCACAAGGT CACAATACAT GTGATGCGAT
  GGCAGGTTTA AAAGGCCAGC CATGCAGACA GCCTACACCT GGTATCACCC TCCTGCTGAG
  CACACCATGC GCGCCTTGTG CTCATCTACA GAGAGCCAGG GGACTCAAGA CTGCTGCTCC
  M
  AGCTGCCGAC GCAATAGCCA CCACATGCAG TGTGCCATTT CCCAAGAGCT GAGAAACAGG
  AGAACCTTGG CTTTCTGCTC ATAATCTGGT TCTTGTGCCC GGGTGCAGGT TTCCATCGTG
  TGGGAAGAAC GGAGTAACGA GTCTCACACA GAAAAAAGTC TTGAGAACAC CTTGTGGCGC
  ACCCAGTGTA ACTGTTACGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss353505632	MGP_WTSI_2_29747597	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220256252					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353505632	MGP_WTSI_2_29747597	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:29782089 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11418	CpG island 11418	1145 bp distal
Gm75149	predicted gene, 75149	1263 bp upstream
Odf2	outer dense fiber of sperm tails 2	within coordinates
Rr554173	regulatory region 554173	1527 bp distal
Rr554174	regulatory region 554174	783 bp distal
Rr554175	regulatory region 554175	1367 bp distal
Tssr456	transcription start site region 456	1963 bp downstream
Tssr17038	transcription start site region 17038	1996 bp downstream
Tssr17039	transcription start site region 17039	1970 bp downstream
Tssr17040	transcription start site region 17040	1566 bp downstream
Tssr17041	transcription start site region 17041	1546 bp downstream
Tssr17042	transcription start site region 17042	1532 bp downstream
Tssr17043	transcription start site region 17043	1521 bp downstream
Tssr17044	transcription start site region 17044	1367 bp downstream
Tssr17045	transcription start site region 17045	1209 bp downstream
Tssr17046	transcription start site region 17046	70 bp downstream
Tssr17047	transcription start site region 17047	977 bp upstream
Tssr23341	transcription start site region 23341	1707 bp upstream