rs220257485 SNP Detail

Summary

• ID
  rs220257485
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:69619688 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCTCTCCG TATAGTCTGG
  CTTGACCTCA AGATGTCTAA TCCTGTTCTG TAAGGAGGAA ACGTCGGCGT TTTCAACCTT
  ACGAATATTA AAAACATGAA CCTATCATAC ATTAAAGTAA CGTATCAGTA AAGATGTCAA
  AAATCAAGAG CTGTTTAATG TTTATAGTAT TTTCATCAAT GGGTTTAAAA TCCTTCAAAA
  W
  ACAGGCAGAG TGGGAGGCTC ACGCCTTTAA TCCCAGCACT CAGAAGGCAG AGACAGGATG
  GGTTCCTGTG AGTTTGAGGT CAGCCTGGGC TGCACAGGGA TTTAAAAAAA AAAAAAAAAA
  GATTTACTGT TTTATGTATG TGAGTACACT GTTTTTAGAC ACACCAGAAG AGGGCACCAG
  ATCCCATTAC AGATGGTTGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324085216	CHEV_12_70673901	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220257485					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:69619688 () rs orientation: forward

Symbol	Name	Function Class
Rr257072	regulatory region 257072	1288 bp distal
Rr257073	regulatory region 257073	113 bp proximal
Rr257074	regulatory region 257074	1713 bp proximal
Rr403327	regulatory region 403327	1630 bp upstream