rs220258059 SNP Detail

Summary

• ID
  rs220258059
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:46866745 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGATGTCA TCAGAGGATT
  TCTTTCTCGC ACCGTGTGAC ACTGTCGGGG ACTTACTGTG TCTTGGCGCC TTATGTGCTT
  TCGGGAGCAA GCCAGGATAT AAATAAATAA AGCGATATGT GGTCTCCACA GGGACCCGGG
  AGGCAAACTG AAGAGGCAAC AGCTGAGGGT GTACGCAGCT TCACACACTG CACGAAACAC
  R
  GATGAAGGCA TCTGGGCACC CACGACTTAC ATAGCTTCGG GCGGTTTCAG GATCCTGATC
  CTCAGCCCTT CCACACTGGA GGGGGCGGGA GGGGGATGCG GGAAGTGTGG CTAAGCTAGC
  ATTATAAAAG ACCCTAGAGG TTATCTAGTC CAGTCCTTCT GTAGATAAGG AAAGTGACTC
  AGGGTATTTT GTTCAAGGTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss385862578	MGP_WTSI_12_47920949	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220258059					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss385862578	MGP_WTSI_12_47920949	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:46866745 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4580	CpG island 4580	within coordinates
Gm60470	predicted gene, 60470	665 bp upstream
Nova1	NOVA alternative splicing regulator 1	602 bp upstream
Rr465708	regulatory region 465708	1044 bp distal
Rr465709	regulatory region 465709	1300 bp distal
Rr465710	regulatory region 465710	543 bp distal
Rr465711	regulatory region 465711	175 bp proximal
Tssr116213	transcription start site region 116213	1866 bp upstream
Tssr116214	transcription start site region 116214	1833 bp upstream
Tssr116215	transcription start site region 116215	1807 bp upstream
Tssr116216	transcription start site region 116216	1605 bp upstream
Tssr116217	transcription start site region 116217	1445 bp upstream
Tssr116218	transcription start site region 116218	1174 bp upstream
Tssr116219	transcription start site region 116219	1025 bp upstream
Tssr116220	transcription start site region 116220	958 bp upstream
Tssr116221	transcription start site region 116221	936 bp upstream
Tssr116222	transcription start site region 116222	904 bp upstream
Tssr116223	transcription start site region 116223	866 bp upstream
Tssr116224	transcription start site region 116224	758 bp upstream
Tssr116225	transcription start site region 116225	713 bp upstream
Tssr116226	transcription start site region 116226	591 bp upstream
Tssr116227	transcription start site region 116227	464 bp upstream
Tssr116228	transcription start site region 116228	445 bp upstream