rs220260897 SNP Detail

Summary

• ID
  rs220260897
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:34723904 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCAGATATG CAGCTTGGTC
  TTCCTGCAGG TCCCCTAACA ATTGAAGCAG GGCTGTCTCT GACTCTGCTG CCTGCCATTG
  TACCCCTTAC CCTACCTGGA CCGCCTGGTT GGAACATGCT TATTTAACTC CGCTGGGATT
  TGATGTCCCA GGATGAGGTG GTACTGGGGG GGGGGGGGGA CACGACTCCC CTTCTCTGAG
  R
  AAAGAGGGAG GGGTAGTAGT GGGGATAGGG ATTGGGGGGC GGGACTGGGA GGAAAGTGGG
  GAGGGGGCTG CGATTGGGAT ATAATGTGAA TAAAAGAAAA ACAACAAAAA AAGTAAATAA
  GTAAAACATA AGCGAATGAG ATGTTACAAT GAGACTCCGT CCTGTGTGTC TGCTACATAA
  TTGTAAGTTA ATTCAGACTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss382963781	MGP_WTSI_11_34646579	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220260897					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382963781	MGP_WTSI_11_34646579	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:34723904 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2724	CpG island 2724	137 bp proximal
Gm57348	predicted gene, 57348	605 bp upstream
Rr402479	regulatory region 402479	428 bp upstream
Rr444978	regulatory region 444978	within coordinates
Rr444979	regulatory region 444979	554 bp proximal
Rr444980	regulatory region 444980	638 bp proximal
Spdl1	spindle apparatus coiled-coil protein 1	Intron
Tssr100930	transcription start site region 100930	642 bp upstream
Tssr100931	transcription start site region 100931	709 bp upstream
Tssr107398	transcription start site region 107398	507 bp downstream
Tssr107399	transcription start site region 107399	526 bp downstream
Tssr107400	transcription start site region 107400	554 bp downstream