rs220267580 SNP Detail

Summary

• ID
  rs220267580
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:151247660 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    tttatgtgc aatgagtcac tggtctggtc
  cgaggcctct ggcttctgct acactatcaa tactggatcc tcactgggac tcccctcagc
  ccattgttgc ctgtgtcgtg gagaccctgc agctttagat ctgcaggtct ggccccttga
  Y
  aagctccagc agctcataga tggggtagat gttagagtgg gccaactcaa aagccctggg
  tagaataact gagctgttca atcccagttc tctagcactg cccaagggca gctcgcccaa
  gtgcctatgc tggcaagggg cagggccagc                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320055962	CHEV_1_153219039	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220267580					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:151247660 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr420285	regulatory region 420285			within coordinates
Swt1	SWT1 RNA endoribonuclease homolog (S. cerevisiae)			Intron
				Noncoding-Transcript-Variant