rs220281221 SNP Detail

Summary

• ID
  rs220281221
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30120301 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATGGCTGT GAGTTCAAGG
  CTAGCCTGGC TGTTTTAGCA GGTGCATGGC CAGGCCAGCT ACTTGGATGT AGGAAGCCCC
  TGTCTCAAAA ACAAAGTGTT GGTAGGGAGA AGGTTTGGGA TAAAGGTACT TGACTTGTAT
  TAGGGCCCCA TAACTGTCAC AAAAAGGCCG GTATCTACAG TAGGCTTCAG AGCACGTGGT
  Y
  TTCCACCTCC AGGGGAGTTC ACACACTTTT TTTTAAAAGG CAAATATTGG AACCAGACAG
  AGTGGCACAC GCCCTTAATC CCAGCACTTT GGAGACAGAA GCTGGCATAT TTCTGTGGAT
  TCTAAGGCCA GCCTGGTCTA CATGGTGAGT TTCAGGACAG CTAGAGCTAC ATAGTTTGAC
  TCTGTCTCTG GGGGTAGGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370906823	MGP_WTSI_7_31205895	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220281221					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370906823	MGP_WTSI_7_31205895	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30120301 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18799	CpG island 18799	541 bp proximal
Hcst	hematopoietic cell signal transducer	1022 bp upstream
Nfkbid	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	856 bp upstream
Rr368301	regulatory region 368301	934 bp downstream
Rr400239	regulatory region 400239	677 bp upstream
Rr400240	regulatory region 400240	1256 bp upstream
Rr644812	regulatory region 644812	1204 bp distal
Rr644813	regulatory region 644813	532 bp distal
Rr644814	regulatory region 644814	366 bp proximal
Rr644815	regulatory region 644815	1040 bp proximal
Rr644816	regulatory region 644816	1909 bp proximal
Tssr65711	transcription start site region 65711	1211 bp downstream
Tssr65712	transcription start site region 65712	1184 bp downstream
Tssr65713	transcription start site region 65713	927 bp downstream
Tssr65714	transcription start site region 65714	848 bp upstream
Tssr65715	transcription start site region 65715	1396 bp upstream
Tssr65716	transcription start site region 65716	1513 bp upstream
Tssr65717	transcription start site region 65717	1557 bp upstream
Tssr65718	transcription start site region 65718	1585 bp upstream
Tssr71741	transcription start site region 71741	1100 bp upstream
Tssr71742	transcription start site region 71742	1004 bp upstream
Tssr71743	transcription start site region 71743	514 bp upstream
Tssr71744	transcription start site region 71744	503 bp upstream
Tssr71745	transcription start site region 71745	732 bp downstream