rs220285702 SNP Detail

Summary

• ID
  rs220285702
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126832494 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAGGCACG CCGCTAGCGC
  CGCAGGGCAC GGCTAGAACT GGTCCACGCC GCCGCCGCCG CCGCCGAGCC CGCGGCTCCT
  CCGGGTCCTA GAGCAGCTCG CCGAGGCCCG TGCTTCCGCT TCCCGTCCCG CCCAGCGGCG
  CCCGGGACGT GGGCCGAGCC CCCTCCTGGC GTGGCGTGGA GCCCGTACCC GTGCGGCTGG
  Y
  TGCTGGGTTC CTGTTGTACC GAGGGGAACG GGGCGGCAGG TGCCCTCGGA CTCACCGGGG
  CCGCGTCCCG GTCGTGGGCC GACGGTGCAG CGCGCTGCAC AGCCCTGGGG CGCCGAGCTT
  CGCGGTACAG AGGACTTGAA AGCGGCTGAG AGCCATCGGT ACAGGTGAGG GCGGCGGTCC
  GCATCGCACA GGAAGGTAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373083632	MGP_WTSI_7_134376836	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220285702					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373083632	MGP_WTSI_7_134376836	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126832494 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19733	CpG island 19733	within coordinates
Gm4532	predicted gene 4532	192 bp upstream
Rr166726	regulatory region 166726	within coordinates
Rr381454	regulatory region 381454	within coordinates
Septin1	septin 1	192 bp upstream
Tssr69182	transcription start site region 69182	418 bp downstream
Tssr69183	transcription start site region 69183	249 bp downstream
Tssr69184	transcription start site region 69184	5 bp downstream
Tssr74974	transcription start site region 74974	668 bp upstream
Tssr74975	transcription start site region 74975	570 bp upstream
Tssr74976	transcription start site region 74976	354 bp upstream
Tssr74977	transcription start site region 74977	87 bp upstream
Zfp553	zinc finger protein 553	within coordinates