rs220291380 SNP Detail

Summary

• ID
  rs220291380
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:88744761 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGTGTCAG GAGCACCCCT
  CAGAAGTTTA GGGACCAAGG ATAGGGGGGT CCTTTCTGGT CCTGGTCTCC CAAGGCCAAC
  TACAAGAGGA ACTAGCCAGG GTGAAGGCCA GGATGATCTG GAATGAACCC GCTTAGAAAT
  TCACTTGGGA ACCAGGTGGT GGTGGAACAC ATCTTTAATC CCAGCACTAA GGAGGGAAAG
  R
  CTGGTGGATC ACTGAGTTCA AGGTCAGCCT GGTCTACAGA GCAAGTTCCA GGACAACACA
  AAGAAACCCT GTCTTAAAAA ACAAACAAAC AGGAGAGAAA AAAAAAAAGA AAAGAAAATC
  ACTTGGGAGC CGGTTGGTGC TGGTACACAC TTTTAATCCC AGAACTGGGG AGGCAGAGGC
  AGGAGGATCT CTATGGGTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss394893483	MGP_WTSI_15_88690988	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220291380					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss394893483	MGP_WTSI_15_88690988	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:88744761 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7516	CpG island 7516	778 bp proximal
Gm33049	predicted gene, 33049	within coordinates
Pim3	proviral integration site 3	1636 bp upstream
Rr369988	regulatory region 369988	1791 bp upstream
Rr404559	regulatory region 404559	1375 bp upstream
Rr507734	regulatory region 507734	1923 bp distal
Rr507735	regulatory region 507735	1138 bp proximal
Rr507736	regulatory region 507736	1823 bp proximal
Tssr132619	transcription start site region 132619	1961 bp downstream
Tssr132620	transcription start site region 132620	1926 bp downstream
Tssr132621	transcription start site region 132621	1620 bp upstream
Tssr132622	transcription start site region 132622	1682 bp upstream
Tssr132623	transcription start site region 132623	1909 bp upstream
Tssr135817	transcription start site region 135817	1435 bp downstream
Tssr135818	transcription start site region 135818	1456 bp downstream