rs220296041 SNP Detail

Summary

• ID
  rs220296041
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:44508913 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCCCCAACA GCCAGGCATA
  TATCTCTGTT TTTTCTTAAT TTTGGTCTTT TCGTTGGATT TTCCCTTTCT TTTTTTTTCC
  CCTCGCCCCC CTCCTTGTTA TCGCTCAGTT TTGAGCGAAG GTTTACATTT TTAAAAATTT
  TGCTTTTCAG CCCGCCTTGA TGTAGCGCGA GTCTCATCGA CTCAAAAAAA AAAAAAAAAA
  K
  CTGTGGTTGG CGTTTTTTTT TTTTTTTCCT TTTTTTTTTT TTCAAATATT TTCAAAGGGG
  AGGAGATTTT TCCACAAGAA AAGGTTGTTT TCATGTTTGG GATCCAGGAA AGCATCCAAC
  GGAGTGGAAG CAGTATGAAG GAAGAGCCGC TGGGCAGCGG CATGAACGCG GTGCGGACGT
  GGATGCAGGG CGCCGGGGTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383201273	MGP_WTSI_11_44431588	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220296041					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383201273	MGP_WTSI_11_44431588	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:44508913 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2762	CpG island 2762	783 bp distal
Cpgi2763	CpG island 2763	59 bp proximal
Cpgi2764	CpG island 2764	1686 bp proximal
D11Mit175	DNA segment, Chr 11, Massachusetts Institute of Technology 175	1395 bp proximal
Ebf1	early B cell factor 1	within coordinates
Gm37695	predicted gene, 37695	1070 bp upstream
Rr369170	regulatory region 369170	773 bp downstream
Rr445653	regulatory region 445653	759 bp distal
Rr445654	regulatory region 445654	within coordinates
Tssr101029	transcription start site region 101029	784 bp downstream
Tssr101030	transcription start site region 101030	750 bp downstream
Tssr101031	transcription start site region 101031	725 bp downstream
Tssr101032	transcription start site region 101032	689 bp downstream
Tssr101033	transcription start site region 101033	573 bp downstream
Tssr101034	transcription start site region 101034	543 bp downstream
Tssr101035	transcription start site region 101035	528 bp downstream
Tssr101036	transcription start site region 101036	456 bp downstream
Tssr101037	transcription start site region 101037	426 bp downstream
Tssr101038	transcription start site region 101038	383 bp downstream
Tssr101039	transcription start site region 101039	199 bp downstream
Tssr101040	transcription start site region 101040	151 bp downstream
Tssr101041	transcription start site region 101041	38 bp upstream
Tssr101042	transcription start site region 101042	99 bp upstream
Tssr101043	transcription start site region 101043	122 bp upstream
Tssr101044	transcription start site region 101044	492 bp upstream
Tssr107570	transcription start site region 107570	17 bp upstream