rs220298410 SNP Detail

Summary

• ID
  rs220298410
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:72759127 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTTTAAGA AAATGTTTCT
  CAAAAGAACA GTACGTAAAC AGAAGGACCT CAGCACCCAT TAGGCTTCCT TCCAAGAGTA
  GAAGCCTCTG CTGCCAGGAG CTATACATGT CTTCCAGTCG CTTCTACAGT GGGACTGGGA
  CTGCAGTGTT CATACATGTA TTTTCTGCAA ACGCCACCAC CTAAGCCTCT GCACAAGAAA
  R
  CAGGCCCATT TCCTCCAGAG CTTATGAGGG GCTGATAACC CTAGTAGCCT CCAGCCTCCT
  TCTAAAGCTG CTTTTGAAAA CTAGATAGGC CTTCCGAATG CTCGCACGAA TGCACAGGGT
  GTAGGCCTCC ATTTACTCTC AAAAGGCCCA CAAGAGCGAC TCCTAGAGGG CGGGAATCCA
  GGCCAAAAGC AAATACAGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss403774828	MGP_WTSI_X_70960860	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs220298410					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss403774828	MGP_WTSI_X_70960860	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:72759127 () rs orientation: forward

Symbol	Name	Function Class
Abcd1	ATP-binding cassette, sub-family D member 1	1076 bp upstream
Bcap31	B cell receptor associated protein 31	within coordinates
Cpgi22777	CpG island 22777	560 bp proximal
Cpgi22778	CpG island 22778	1538 bp proximal
Rr406105	regulatory region 406105	880 bp upstream
Rr691928	regulatory region 691928	within coordinates
Rr691929	regulatory region 691929	153 bp proximal
Rr691930	regulatory region 691930	395 bp proximal
Rr691931	regulatory region 691931	644 bp proximal
Tssr161281	transcription start site region 161281	1056 bp upstream
Tssr161282	transcription start site region 161282	1191 bp upstream
Tssr161283	transcription start site region 161283	1232 bp upstream
Tssr161284	transcription start site region 161284	1265 bp upstream
Tssr161285	transcription start site region 161285	1418 bp upstream
Tssr163562	transcription start site region 163562	624 bp downstream
Tssr163563	transcription start site region 163563	677 bp downstream
Tssr163564	transcription start site region 163564	921 bp downstream