rs220298723 SNP Detail

Summary

• ID
  rs220298723
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:69331662 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAACCATAG ATAAGTATTT
  ATCTCTGGAC TCTTGAGTGC TTTCTGTGAT CAGTTAACTG GAGAGGCATT TTTAAAATGC
  ATTGTGTTAG ATGCCCCTTT GCCCCTTTAT TAATCTCATA AAATCTTGAA GTTCTCTGAA
  AGTTCCAGGT AGCAGTGCAG GTCGGTTTGG AGTCTGATCA AATGACTTTT AAGCTTGAAA
  Y
  TCGGCTGTGT GGCTATTCTA GATAAAACAC AAAGCATTTC TACACTTCTG TTTTTATGTC
  TTTTATGCCA CTGCCATGTT TTAAAATTAG AGCTTCCTAT ATACTTCTTT CAGAGGTTGG
  CCATATTCTA GTTATGTGCC CTGGAGTATC TCTGCCATTT CCAAAGTTGT TCAGTGGGGT
  TTCGCTCTTG CCAACTTTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375074705	MGP_WTSI_8_71402909	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220298723					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375074705	MGP_WTSI_8_71402909	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:69331662 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20405	CpG island 20405	1403 bp proximal
D8Mit26	DNA segment, Chr 8, Massachusetts Institute of Technology 26	334 bp proximal
Gm64236	predicted gene, 64236	within coordinates
Lpl	lipoprotein lipase	1545 bp upstream
Rr664453	regulatory region 664453	1836 bp distal
Rr664454	regulatory region 664454	172 bp distal
Rr664455	regulatory region 664455	1001 bp proximal
Rr664456	regulatory region 664456	1492 bp proximal
Tssr77601	transcription start site region 77601	1538 bp upstream
Tssr77602	transcription start site region 77602	1621 bp upstream
Tssr77603	transcription start site region 77603	1640 bp upstream
Tssr77604	transcription start site region 77604	1704 bp upstream
Tssr77605	transcription start site region 77605	1713 bp upstream