rs220299808 SNP Detail

Summary

• ID
  rs220299808
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:95159157 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATCTATCTT CCCCTCCTAA
  TTACAACCCA AAAGTCCGTT TCACCACAGT TCTCCCCGGG GAACCAGTGA GTTTATTGTA
  CTTTCTTACT TACAGAGCAC AGTGACCCCA AAGCAGCTAC ACTGGAAAGT CTCCACCCAG
  CATGGACGAT GGCTTGATGG CTTCCCCAGA GCTGTATAGG TGGAGCCTTC CCCTCTAGTT
  Y
  TCCCCAGCCT ATATACTCTT GCCCTGTCTA GAGGCCTCAT GCAATTAGGG CAGAATTGCA
  CACAAGTGAC TGGGAGGAGT GGCCAGAAAC TCAGGAGAGG GTCTAATGTC CTAGTCTCAT
  GAAGATGGCA GCATCTGAGC TCATAGGATA CCTTCATAAC ACAGACCGAA CACAGGGTAA
  CTCTGGGGAA ATGGTTCTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375642129	MGP_WTSI_8_96956429	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220299808					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375642129	MGP_WTSI_8_96956429	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:95159157 () rs orientation: forward

Symbol	Name	Function Class
9330175E14Rik	RIKEN cDNA 9330175E14 gene	598 bp downstream
Cpgi20846	CpG island 20846	1342 bp proximal
Nlrc5	NLR family, CARD domain containing 5	1827 bp upstream
Rr401062	regulatory region 401062	1653 bp upstream
Rr667981	regulatory region 667981	1188 bp proximal
Rr667982	regulatory region 667982	1658 bp proximal
Rr667983	regulatory region 667983	1873 bp proximal
Tssr78863	transcription start site region 78863	1814 bp upstream
Tssr78864	transcription start site region 78864	1849 bp upstream
Tssr82495	transcription start site region 82495	1613 bp downstream
Tssr82496	transcription start site region 82496	1730 bp downstream