rs220301507 SNP Detail

Summary

• ID
  rs220301507
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:73074107 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACGCGCGG TCTCCTCACG
  CCGCCCTCGT CCCCGCTGGA GCTGCTGGAG GCCAAGCCCA AACGCGGCCG CCGCTCCTGG
  CCCCGCAAGC GCGCCGCCAC ACATACTTGC AGCTACACCA ACTGCGGCAA GACCTACACC
  AAGAGCTCGC ACCTAAAGGC GCATCTGCGT ACACACACAG GTGGGCGCCT GGCCTCATTC
  M
  CGGGATCTGC GGCAGGGGGA TGGCCGCGAG TTCAGGAACA GGCTAGGTTA CAGAGGAAGA
  CCCTGTCCAT CCTCCAGAAG GGAAATGGAT ACTGTCCCCA GAGTCTATGA CACTGCCAAG
  GGGGTGTGGC AGTTTAATGG GTTGGCTCCG AGGGACTCAG GTCTCAAGAA TTCGGGACAT
  AATTAAGAAG CTGTGGAGGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375129544	MGP_WTSI_8_74844162	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220301507					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375129544	MGP_WTSI_8_74844162	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:73074107 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20584	CpG island 20584	within coordinates
Klf2	Kruppel-like transcription factor 2 (lung)	within coordinates
Rr382266	regulatory region 382266	1633 bp upstream
Rr400967	regulatory region 400967	1136 bp downstream
Rr665301	regulatory region 665301	1914 bp distal
Rr665302	regulatory region 665302	1220 bp distal
Tssr2606	transcription start site region 2606	1355 bp upstream
Tssr77968	transcription start site region 77968	1371 bp downstream
Tssr77969	transcription start site region 77969	1348 bp downstream
Tssr77970	transcription start site region 77970	1192 bp downstream
Tssr77971	transcription start site region 77971	692 bp downstream
Tssr77972	transcription start site region 77972	656 bp downstream
Tssr77973	transcription start site region 77973	629 bp downstream
Tssr77974	transcription start site region 77974	564 bp downstream
Tssr77975	transcription start site region 77975	386 bp downstream
Tssr77976	transcription start site region 77976	162 bp downstream