rs220303551 SNP Detail

Summary

• ID
  rs220303551
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:51372145 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAAGCTTC CAGACTCCCC
  AAGTTCTACA GGCCACAGCA GAAATGATAT AATGTGATAA AGTTCCAAAA GGATCTCTCT
  CACTGAAAGA GATACTGGAT GGAACCAGGA GTCACTTTAT CCACCTCATT GTCTCCTTGC
  TGCAGAACCC ACAAAATGAA GACCCCCAGG GAATTGTCTA CGCCCAGGTA AAACCCTCCA
  K
  GCTTCAGAAG GTAGGAATTA ATGTTTCCCC ACTGTCAGGA ACCTTTCCCC TCAGGTTCAT
  TCTAGCCCCA TAAGTTACTA ACACTAAACA CCTTCTTCCA ACTCTATCCA ACCCCAGGAC
  ACTGCATGCA AAGAGACCCA GGATGTAACC TATGCCCAGT TGTGCATCAG GACACAGGAA
  CAGAACAACA GCTGAAACCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss380379877	MGP_WTSI_10_51215855	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220303551					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss380379877	MGP_WTSI_10_51215855	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:51372145 () rs orientation: forward

Symbol	Name	Function Class
Gm40645	predicted gene, 40645	within coordinates
Gm49339	predicted gene, 49339	within coordinates
Lilrb4a	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	within coordinates
Tssr93279	transcription start site region 93279	1904 bp downstream
Tssr93280	transcription start site region 93280	1457 bp downstream
Tssr93281	transcription start site region 93281	1409 bp downstream
Tssr93282	transcription start site region 93282	1391 bp downstream
Tssr93283	transcription start site region 93283	1301 bp downstream
Tssr93284	transcription start site region 93284	933 bp downstream
Tssr93285	transcription start site region 93285	749 bp downstream
Tssr93286	transcription start site region 93286	646 bp downstream
Tssr93287	transcription start site region 93287	262 bp downstream
Tssr93288	transcription start site region 93288	11 bp downstream
Tssr93289	transcription start site region 93289	36 bp upstream
Tssr97556	transcription start site region 97556	1538 bp upstream
Tssr97557	transcription start site region 97557	1201 bp upstream
Tssr97558	transcription start site region 97558	within coordinates
Tssr97559	transcription start site region 97559	442 bp downstream
Tssr97560	transcription start site region 97560	538 bp downstream