rs220303681 SNP Detail

Summary

• ID
  rs220303681
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:181221942 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACAGGTCT GTGGGAAGCT
  AACATCGTGC TGGTCTTAGA AAGGGAAGGC TTTACTTAAT TCCAGATTTG TTACTGCTTA
  CAGAATAGAC CTGTCCCACC TATTGATTCA CTAGACTTGG CTCCAAAATA CCACACCCTG
  ACCCCAGAAC TTCATCTTTA CCTAAGATAC ACCAGGCTAC CTGGCTACTA CACTCCTTAA
  Y
  TTCCATCTTT GAGGTTTTCT TCTTTCAGGG CTCCATTTTA GGCCTCAGGG CTGTCTGAGG
  TAGGTGGTGC TGGAAGCTGC TGCTCAGTTT TCATTTTCCC CTGGCTATCC CTTAGGTAAC
  AGCGCTGTCA TCTATGGCTC AAAGCCACTC ACCAGGGAGT TGCTGCAGAC CTGTATGTAT
  CCTTATACAG AGAAACAGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356781053	MGP_WTSI_2_181314854	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220303681					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356781053	MGP_WTSI_2_181314854	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:181221942 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12930	CpG island 12930	945 bp proximal
Rr56332	regulatory region 56332	58 bp proximal
Rr397593	regulatory region 397593	937 bp upstream
Tssr22325	transcription start site region 22325	1775 bp downstream
Tssr22326	transcription start site region 22326	810 bp downstream
Tssr22327	transcription start site region 22327	782 bp downstream
Tssr22328	transcription start site region 22328	624 bp downstream
Tssr22329	transcription start site region 22329	596 bp downstream
Tssr22330	transcription start site region 22330	582 bp downstream
Tssr28212	transcription start site region 28212	1203 bp upstream
Tssr28213	transcription start site region 28213	981 bp downstream
Tssr28214	transcription start site region 28214	1751 bp downstream
Tssr28215	transcription start site region 28215	1825 bp downstream
Tssr28216	transcription start site region 28216	1847 bp downstream
Uckl1	uridine-cytidine kinase 1-like 1	within coordinates
Uckl1os	uridine-cytidine kinase 1-like 1, opposite strand	within coordinates
Zfp512b	zinc finger protein 512B	1983 bp downstream