rs220306977 SNP Detail

Summary

• ID
  rs220306977
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:63217815 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGTAATCC CAGTATTGAG
  GATCATCCTG TGCTACACAG TGAGCTCTAG GCCAGCGTAG GCTATGCGAG ACCAGTCTCC
  AAAACAACCA AACCACACAG AGAAATGACA ACGACAACCA AACAGCTTTG AAGAATTATA
  TATATAACTT TTCCTTTGAT AGATCCTGCT CTTGGACACT GGTAACTTTG GCAGCAGAAC
  R
  GAAAGGGATT GTGTCCCATT TTATAGGTGG AGGGATGGAA AGGGGGCAGT TAAAATCTGC
  TCGCTTCCCA CTGGATTTCA GGCCAGAATG GATCAGCAAG GTCCTGAGAA CTCAGTGGTG
  GGGACCAAGT CGGATTCAGA CTAATATCAC AGAACGTTGG ACATGGCTCA GATTGTAAGA
  GTGCTTGCAA GCAAGGTTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323333510	CHEV_10_62844784	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220306977					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:63217815 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1649	CpG island 1649	181 bp distal
Cpgi1650	CpG island 1650	296 bp proximal
Dnajc12	DnaJ heat shock protein family (Hsp40) member C12	407 bp upstream
Gm66647	predicted gene, 66647	within coordinates
Rr215754	regulatory region 215754	786 bp proximal
Rr224928	regulatory region 224928	within coordinates
Rr369009	regulatory region 369009	33 bp upstream
Tssr97916	transcription start site region 97916	708 bp downstream