rs220315295 SNP Detail

Summary

• ID
  rs220315295
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:56285407 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATCATCTCA AGAGTTTCAG
  TGGTCTTGGT TATTTTCAAC GTTGTTCAAA CTTTCAAGTC TAAAACCTTG AGACTCCAGG
  CAAACTCTTT CAACTGTGAG CCCCTAGAGC TTCCTGATGC TGTGACCCTT TAATATGGTT
  CCTCATGTTG TGGTGACCCC CCCCCCATTC CCAACCATAA CATGAGTCTC ATTGCTACTT
  Y
  ACAACTGCAA GTTTTCTACT GCTATGAGTC ATAGTGCAAA TATCTGACAC TCAGGATGGC
  TGATAGGTGA ACCCTGGGAA AGGGTCATTT GACTCCCAAG GGAGTCATGA CCCTCAGGTT
  CAGAAGCATC GCCCTATAGA ATTGAAAAGC CACTTACATA CTTCTAACAT GCAATGGCTT
  GGAACAAACT CTCCCGTTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss388702036	MGP_WTSI_13_56238955	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220315295					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss388702036	MGP_WTSI_13_56238955	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:56285407 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5695	CpG island 5695	1549 bp distal
Macroh2a1	macroH2A.1 histone	1968 bp upstream
Rr480643	regulatory region 480643	1473 bp distal
Rr480644	regulatory region 480644	1848 bp proximal
Tssr122743	transcription start site region 122743	1939 bp upstream
Tssr122744	transcription start site region 122744	1926 bp upstream
Tssr122745	transcription start site region 122745	1906 bp upstream
Tssr122746	transcription start site region 122746	1784 bp upstream
Tssr122747	transcription start site region 122747	1746 bp upstream
Tssr122748	transcription start site region 122748	1679 bp upstream
Tssr122749	transcription start site region 122749	1638 bp upstream
Tssr122750	transcription start site region 122750	1507 bp upstream
Tssr122751	transcription start site region 122751	406 bp upstream
Tssr122752	transcription start site region 122752	1004 bp downstream