rs220319258 SNP Detail

Summary

• ID
  rs220319258
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:92491735 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGAATGCGC GGCGGGCCTT
  GGTGGGGGCG GGGCCTTAGC TGCACAAATA GGATGCGCGG CGGGCCTTGG TAGGGGCGGA
  GCCTTAGCTG CACAAATAGG ATGCGCGGCG GGCCTTGGTG GGGGCGGGGC CTAAGCTGCG
  CAAGTGGTAC ACAGCTCAGG GCTGCGATTT CGCGCCAAAC TTGACGGCAA TCCTAGCGTG
  R
  AGGCTGGTAG GATTTTATCC CCGCTGCCAT CATGGTTCGA CCATTGAACT GCATCGTCGC
  CGTGTCCCAA AATATGGGGA TTGGCAAGAA CGGAGACCTA CCCTGGCCTC CGCTCAGGTA
  TTGGCCGGGC TGGGCTCGGG AAACTGAGGC GGTTCACTGA GTAGGGTCAT GCACTTGGCT
  TGGACGCGCG GGACGGGCGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss389492714	MGP_WTSI_13_93125182	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220319258					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss389492714	MGP_WTSI_13_93125182	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:92491735 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5933	CpG island 5933	within coordinates
Dhfr	dihydrofolate reductase	within coordinates
Gm19308	predicted gene, 19308	1123 bp downstream
Msh3	mutS homolog 3	220 bp upstream
Rr403896	regulatory region 403896	426 bp downstream
Rr483661	regulatory region 483661	491 bp distal
Rr483662	regulatory region 483662	689 bp distal
Rr483663	regulatory region 483663	539 bp distal
Rr483664	regulatory region 483664	within coordinates
Tssr120622	transcription start site region 120622	461 bp downstream
Tssr120623	transcription start site region 120623	51 bp downstream
Tssr120624	transcription start site region 120624	17 bp downstream
Tssr120625	transcription start site region 120625	10 bp downstream
Tssr120626	transcription start site region 120626	12 bp upstream
Tssr123429	transcription start site region 123429	707 bp upstream
Tssr123430	transcription start site region 123430	202 bp upstream