rs220338848 SNP Detail

Summary

• ID
  rs220338848
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:127442521 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTCCTCCT ATATAGACCA
  GGATGGCCTC AAATGCACGG AGATCCATCT TTCTCTGCCT CTTGAGTGCT GAGATTAAAT
  TAAAAGCTCG CTCCTTCTTT TTTCTTCTCC TCCTCCTCCA TTATGCATTA CTACCAGAAG
  GCATTCCTGT TCATAGTCAC TATGTAATAA AAATGTTAGA AAACAAGAAA CTCCTTACTA
  Y
  GTAGCTGGAA TGTAGATGTG GCCCTGATCT GGTCTCCAAT CACTTTTTAA AAATTCACTT
  AAAATATTTT ATTATATGGC TTACACTTTT ATTAATGGGT TTGTGTGTGT TCAATATGTA
  GATCAGGCTA ACCTCCAACA GAATGCAGCT GGTCTCCCAA ACAATGTTTG TAAGTCTCAG
  GAGGAACCCC TCTTCCCATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373094518	MGP_WTSI_7_134986863	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220338848					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373094518	MGP_WTSI_7_134986863	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:127442521 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19771	CpG island 19771	738 bp distal
Gm72953	predicted gene, 72953	866 bp upstream
Rr153807	regulatory region 153807	1880 bp proximal
Rr166763	regulatory region 166763	320 bp distal
Rr400656	regulatory region 400656	1633 bp downstream
Stx4a	syntaxin 4A (placental)	within coordinates
Tssr69297	transcription start site region 69297	1606 bp downstream
Tssr69298	transcription start site region 69298	1546 bp downstream
Tssr69299	transcription start site region 69299	1502 bp downstream
Tssr69300	transcription start site region 69300	1484 bp downstream
Tssr69301	transcription start site region 69301	1469 bp downstream
Tssr69302	transcription start site region 69302	1416 bp downstream
Tssr69303	transcription start site region 69303	1387 bp downstream
Tssr75044	transcription start site region 75044	1868 bp upstream
Tssr75045	transcription start site region 75045	861 bp upstream