rs220343033 SNP Detail

Summary

• ID
  rs220343033
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:116389034 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCGGAGCC GGCGGGTGGC
  GGTTGGGGTC GCGCCAATGG GGAAGATGGC GGCTGGGTTC CGTGGGGATC GGTCGGTCCG
  CGGGTGTCGG ACTGTCACAC CGGGAATCGG GAAGGGACCC TGCGGACTTA ATGGATACCT
  TTGTTTGTGG CCGGGCCGGC CGTTGCGGAG GGGACGCGAG GAAAGGGAAT GAGGAAATGG
  S
  AAGCCGACTC CTTCACGTCC GTGTTCTGGC CCTCAGCGGG ACAGAGCCCA GCCTGTCCTT
  TCTGGGTGGC AACTCTGATT CTCCCTGTCA TTTCCACAAA AGCTTCACGG TGACTTCAGG
  GAGCTGTCCG CACTAGGATT CAGGTCGCCC GGCCCTTCAC TCATGCTCTC CTTTGAAGAA
  CACTGGGGGT GAAGCTTTAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320895817	CHEV_3_116298303	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220343033					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116389034 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13737	CpG island 13737	within coordinates
Rr397965	regulatory region 397965	321 bp downstream
Rr583746	regulatory region 583746	914 bp distal
Rr583747	regulatory region 583747	617 bp distal
Rr583748	regulatory region 583748	365 bp distal
Rr583749	regulatory region 583749	within coordinates
Rr583750	regulatory region 583750	175 bp distal
Sass6	SAS-6 centriolar assembly protein	within coordinates
Trmt13	tRNA methyltransferase 13	within coordinates
Tssr31360	transcription start site region 31360	354 bp downstream
Tssr35316	transcription start site region 35316	544 bp upstream
Tssr35317	transcription start site region 35317	487 bp upstream