rs220345470 SNP Detail

Summary

• ID
  rs220345470
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:149981041 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AGAGAACGT GAGAGGGCAT TTAGTGAAGG
  GATAAACTAt cttcctcttc ctcctcctcc tcctcctttt cttcttcttc ttctAGAAAT
  AGAAAAGGAC CGAGTTTACT GAGAAAGAGG AGTGGGAATG GGGTCAGCTA GTGAGCGGGG
  R
  AAAGCCTATG CTCAACAGCC AGGACAATTG TCACCCGTTC CCAGTTTGAT GTTCCTGTAT
  CTCTATCTTT GGTACCTTCC AGGAGAGAAG GAAATGGCTG CAGAATTGAA AGCCCTCTAC
  AGTGACATCG ATGTCATGGA ACTGTACCCT                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320045540	CHEV_1_151952420	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220345470					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:149981041 () rs orientation: forward

Symbol	Name	Function Class
Ptgs2	prostaglandin-endoperoxide synthase 2	within coordinates
Rr12935	regulatory region 12935	641 bp distal
Rr24983	regulatory region 24983	745 bp distal
Tssr9248	transcription start site region 9248	1602 bp downstream
Tssr9249	transcription start site region 9249	1588 bp downstream
Tssr9250	transcription start site region 9250	1387 bp downstream
Tssr9251	transcription start site region 9251	1335 bp downstream
Tssr9252	transcription start site region 9252	1300 bp downstream
Tssr9253	transcription start site region 9253	1275 bp downstream
Tssr9254	transcription start site region 9254	1259 bp downstream
Tssr9255	transcription start site region 9255	1208 bp downstream
Tssr9256	transcription start site region 9256	1003 bp downstream
Tssr9257	transcription start site region 9257	969 bp downstream
Tssr9258	transcription start site region 9258	953 bp downstream
Tssr9259	transcription start site region 9259	896 bp downstream
Tssr9260	transcription start site region 9260	844 bp downstream
Tssr9261	transcription start site region 9261	825 bp downstream
Tssr9262	transcription start site region 9262	804 bp downstream
Tssr9263	transcription start site region 9263	792 bp downstream
Tssr9264	transcription start site region 9264	743 bp downstream
Tssr9265	transcription start site region 9265	716 bp downstream
Tssr9266	transcription start site region 9266	627 bp downstream
Tssr9267	transcription start site region 9267	292 bp downstream
Tssr9268	transcription start site region 9268	222 bp downstream
Tssr9269	transcription start site region 9269	94 bp upstream
Tssr9270	transcription start site region 9270	134 bp upstream
Tssr9271	transcription start site region 9271	158 bp upstream
Tssr9272	transcription start site region 9272	188 bp upstream
Tssr9273	transcription start site region 9273	240 bp upstream
Tssr9274	transcription start site region 9274	258 bp upstream
Tssr9275	transcription start site region 9275	285 bp upstream
Tssr9276	transcription start site region 9276	300 bp upstream
Tssr9277	transcription start site region 9277	350 bp upstream
Tssr9278	transcription start site region 9278	371 bp upstream
Tssr9279	transcription start site region 9279	392 bp upstream
Tssr9280	transcription start site region 9280	409 bp upstream
Tssr9281	transcription start site region 9281	515 bp upstream
Tssr9282	transcription start site region 9282	550 bp upstream
Tssr9283	transcription start site region 9283	564 bp upstream
Tssr9284	transcription start site region 9284	579 bp upstream
Tssr9285	transcription start site region 9285	589 bp upstream
Tssr9286	transcription start site region 9286	673 bp upstream
Tssr9287	transcription start site region 9287	1186 bp upstream
Tssr9288	transcription start site region 9288	1302 bp upstream
Tssr9289	transcription start site region 9289	1319 bp upstream
Tssr9290	transcription start site region 9290	1475 bp upstream
Tssr9291	transcription start site region 9291	1521 bp upstream
Tssr9292	transcription start site region 9292	1640 bp upstream
Tssr9293	transcription start site region 9293	1669 bp upstream
Tssr9294	transcription start site region 9294	1689 bp upstream
Tssr9295	transcription start site region 9295	1705 bp upstream
Tssr9296	transcription start site region 9296	1727 bp upstream
Tssr9297	transcription start site region 9297	1736 bp upstream
Tssr9298	transcription start site region 9298	1762 bp upstream
Tssr9299	transcription start site region 9299	1784 bp upstream
Tssr9300	transcription start site region 9300	1801 bp upstream
Tssr9301	transcription start site region 9301	1935 bp upstream
Tssr9302	transcription start site region 9302	1965 bp upstream