rs220351552 SNP Detail

Summary

• ID
  rs220351552
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:44884648 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTGAGGTG GAGCGACCGA
  GCGTGCCATG CATTGAGCTA GGGAGCCTCT CTCAATTCCA CGACTGGGCT CGGCGTGGGA
  GAGGCGCCTG ACGGGCGGCC CGCAGAGGCT TCGTGGAGGC CTTTCCGGGG TCTCGTCGAC
  GGGGCTGCGG GAGTTCTCCG CACCGGGCCG GGGCTTGTGG GCAGAGGTTA GGCAGGCGTG
  Y
  GGGGGGCTCA GCTGTGGGAG TTTTCGGCTG GCGGGAGGTG GCGAATTAGC CGAGGAGCCC
  TAACTTGTAT AAAAGCAGAG TCCATTTAAA GTTGGGCTGG CTAGCCTCTC TCTCATTGGT
  TAAGGGGCTT GGAAAAAAGA GACTCGGCGA GCCCTCCGCT GTGGTGCTGC CGCCGCCACC
  GCCGCCGCTG GAGTTGACTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss388465234	MGP_WTSI_13_44826541	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220351552					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss388465234	MGP_WTSI_13_44826541	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:44884648 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5525	CpG island 5525	within coordinates
Gm60383	predicted gene, 60383	1071 bp upstream
Jarid2	jumonji and AT-rich interaction domain containing 2	within coordinates
Rr369688	regulatory region 369688	456 bp downstream
Rr403743	regulatory region 403743	within coordinates
Rr403744	regulatory region 403744	1628 bp upstream
Rr478586	regulatory region 478586	1082 bp distal
Rr478587	regulatory region 478587	within coordinates
Rr478588	regulatory region 478588	27 bp proximal
Tssr119535	transcription start site region 119535	1622 bp downstream
Tssr119536	transcription start site region 119536	1558 bp downstream
Tssr119537	transcription start site region 119537	1475 bp downstream
Tssr119538	transcription start site region 119538	1365 bp downstream
Tssr119539	transcription start site region 119539	574 bp downstream
Tssr119540	transcription start site region 119540	356 bp downstream
Tssr119541	transcription start site region 119541	265 bp downstream
Tssr119542	transcription start site region 119542	136 bp downstream
Tssr119543	transcription start site region 119543	93 bp upstream
Tssr119544	transcription start site region 119544	109 bp upstream
Tssr119545	transcription start site region 119545	153 bp upstream
Tssr119546	transcription start site region 119546	181 bp upstream
Tssr119547	transcription start site region 119547	396 bp upstream
Tssr119548	transcription start site region 119548	552 bp upstream
Tssr119549	transcription start site region 119549	670 bp upstream