rs220361289 SNP Detail

Summary

• ID
  rs220361289
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:119577015 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTATAAGAA ATTTCAGGAG
  CTGTCAGGAA TGCTCTGCTG AGATAGTGGG CAGGAAAGCG ACTCACAAAA CCAAGCCGGG
  CAGTGGTGGT GCATGCCTTT AATTCCAGCA CTTGAGAGGC AGAGGCAGGC AAATTTCTGA
  GTTCCAGGCC AACCTGGTCT ACAGGACAGT CAGGGCTATA CAAAGAAACC CTGCCTCAGG
  R
  AAAAAAAAAA AAAAGACTCA CAAAACCAAG GAGAGTGCGG AATGGCTCTA TTTCATGTCA
  GCTCAGGGAC AAGTTGATAC TGTTATCATA TATTAACTGG TCAAACCATC ATATATTTAA
  AGACCTATCT CAATGTTTCA CAGCCTGGCC TCAAATTTCT GGGTTCACAT AATCTTCCTT
  TTTCAGCCTC CCACGTAGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CZECHII/EiJ	JF1/MsJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWK/PhJ	RIIIS/J
ss355435835	MGP_WTSI_2_119572270	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CZECHII/EiJ	JF1/MsJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWK/PhJ	RIIIS/J
rs220361289					SNP	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355435835	MGP_WTSI_2_119572270	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:119577015 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12126	CpG island 12126	1594 bp distal
Itpka	inositol 1,4,5-trisphosphate 3-kinase A	Intron
Rr563573	regulatory region 563573	1995 bp distal
Rr563574	regulatory region 563574	922 bp distal
Rr563575	regulatory region 563575	1452 bp distal