rs220368888 SNP Detail

Summary

• ID
  rs220368888
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:51446437 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCCGGTTCC CGGGAGAGGG
  GGGAGGGGAA GCTTCGCAGA CTCGCTCCGG GAAGCCGGGG GGGCCCCAGA AACGTTCCGC
  CGCGAACACA ACCGAGCCCC TAGGCCCGCG CACATCGAAA GGCCAGCGAT GGCCCGCTCA
  CGCGCTACTT TAGCGGTCCA GCCCGGTCGC GGCGGGCACT TCCCATCCCC CACCCCAACT
  R
  AGGGAAATGG CGCCGGGCGG CTGAGGGCGG GGAAGGCGGT CGGACAATCA GAGGCCTCCT
  CCAACGACCC CTCAGAAACT CGCCAAGGCC AACCGCCACT CGAGTGGCCG CATCCCCTCC
  GCCGGACCAC GGAGGCGGGT GGCCGGTTTC CATTGCGGTG CCTACGGCCT CGCCATGCCA
  TTTTTAATAA CTCATTGATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss368292342	MGP_WTSI_6_51419456	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220368888					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss368292342	MGP_WTSI_6_51419456	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:51446437 () rs orientation: forward

Symbol	Name	Function Class
Cbx3	chromobox 3	1159 bp upstream
Cpgi17402	CpG island 17402	within coordinates
Gm67572	predicted gene, 67572	within coordinates
Hnrnpa2b1	heterogeneous nuclear ribonucleoprotein A2/B1	within coordinates
Rr379347	regulatory region 379347	within coordinates
Rr630212	regulatory region 630212	1460 bp distal
Rr630213	regulatory region 630213	17 bp distal
Rr630214	regulatory region 630214	305 bp proximal
Rr630215	regulatory region 630215	1249 bp proximal
Tssr56443	transcription start site region 56443	within coordinates
Tssr56444	transcription start site region 56444	726 bp upstream
Tssr56445	transcription start site region 56445	882 bp upstream
Tssr56446	transcription start site region 56446	948 bp upstream
Tssr56447	transcription start site region 56447	964 bp upstream
Tssr56448	transcription start site region 56448	976 bp upstream
Tssr56449	transcription start site region 56449	1037 bp upstream
Tssr56450	transcription start site region 56450	1053 bp upstream
Tssr56451	transcription start site region 56451	1090 bp upstream
Tssr56452	transcription start site region 56452	1151 bp upstream
Tssr56453	transcription start site region 56453	1176 bp upstream
Tssr60945	transcription start site region 60945	1636 bp upstream
Tssr60946	transcription start site region 60946	988 bp upstream
Tssr60947	transcription start site region 60947	379 bp downstream
Tssr60948	transcription start site region 60948	412 bp downstream
Tssr60949	transcription start site region 60949	1572 bp downstream