rs220373045 SNP Detail

Summary

• ID
  rs220373045
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:140426001 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAACTCACTC TGTAGACCAG
  GATCTGCCTG CCTCTGCCTC CCAAGTGCTG GGATTAAAGG CTTGCACCAC CCCTGCCTGG
  TTTCGTGTCC ACATTAATAT AATAAAATTA GTCATGAGAT CTGTTGTTGT GGCTTTTTTT
  GTTTGTTTGT TTGTCCTTTT TGCTCTAAGT CCTCAAGTCT AGGGTGGGCT GGGTGTAATA
  S
  TGGTACAGAC CCAGGATGCC AGGGCTCAGG AGATGACGCA GTGAAACCAC CAGTTCAAGG
  CCAGGCTGGG CTACACAGGG AAACCTTGCT TCACGAACAT GGTAAAACAG CAGCAGCAAC
  AACCACCAAA CCAAAACCAA ACCAAAACCA ACAATTCCAG TGTGTGTTTG TGCTACAACG
  TAATTGCGGC ACGGATCAGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363501281	MGP_WTSI_4_140254605	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220373045					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363501281	MGP_WTSI_4_140254605	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:140426001 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15194	CpG island 15194	823 bp proximal
Gm69527	predicted gene, 69527	441 bp downstream
Gm69529	predicted gene, 69529	1183 bp upstream
Rcc2	regulator of chromosome condensation 2	1851 bp upstream
Rr377298	regulatory region 377298	321 bp upstream
Rr603516	regulatory region 603516	1987 bp distal
Rr603517	regulatory region 603517	693 bp proximal
Rr603518	regulatory region 603518	1361 bp proximal
Rr603519	regulatory region 603519	1862 bp proximal
Tssr39970	transcription start site region 39970	1176 bp upstream
Tssr39971	transcription start site region 39971	1245 bp upstream
Tssr39972	transcription start site region 39972	1274 bp upstream
Tssr39973	transcription start site region 39973	1296 bp upstream
Tssr39974	transcription start site region 39974	1645 bp upstream
Tssr39975	transcription start site region 39975	1781 bp upstream
Tssr39976	transcription start site region 39976	1797 bp upstream
Tssr39977	transcription start site region 39977	1912 bp upstream
Tssr44270	transcription start site region 44270	953 bp downstream
Tssr44271	transcription start site region 44271	975 bp downstream
Tssr44272	transcription start site region 44272	1109 bp downstream