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rs220379498 SNP Detail
Summary
  • ID
    rs220379498
  • Variation Type
    SNP
  • Alleles
    A/T
Genome Location and Flanking Sequence
  • Location
    Chr19:44385772 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                AAGCAGAGAG GCCTGGGGTC
TTTGGTAAGT AGGCTGTTAG ATATGGCTAC CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT
CTCTCTCTCT TCCATCTTTA CTTACAAATC ATACCACGCA TGCTAACTTT TCTCTCGAGA
CAATCTACTT GCTCTGTATC AAATGAAGAT AATTTCTCCA TCCCATCTAG CACAACCTGC
W
GTGAACTTCA TCAGCGGGGA CTTGCTCTAT CCCTAGTTTG AGGCAGCAGT CTTGAAGCTA
GGAACAAGGA GGGATGTATT CAGGAGGAAG GATCAGTATT TCAGAAAACA GAAAGGTGGC
CTGGGCTTTG GAGGGTGGAC AGACACAGGC CAGTGGTTGG TCAACTATTT GCCTGAAGGT
GGTGATGACA GAGAAGAAAC                                            

W = A/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss402552123 MGP_WTSI_19_44471823 EVA_MGPV3 EVA_MGPV3 f SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs220379498 SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss402552123 MGP_WTSI_19_44471823 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr19:44385772 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
D19Mit67 DNA segment, Chr 19, Massachusetts Institute of Technology 67 67 bp distal
D19Mit67.2 DNA segment, Chr 19, Massachusetts Institute of Technology 67.2 163 bp distal
D19Nds1 DNA segment, Chr 19, Nuffield Department of Surgery 1 50 bp distal
Rr548237 regulatory region 548237 1915 bp distal
Rr548238 regulatory region 548238 252 bp distal
Rr548239 regulatory region 548239 1381 bp proximal
Scd1 stearoyl-Coenzyme A desaturase 1 within coordinates
Tssr5524 transcription start site region 5524 969 bp upstream
Tssr156606 transcription start site region 156606 907 bp downstream
Tssr156607 transcription start site region 156607 586 bp downstream
Tssr156608 transcription start site region 156608 171 bp downstream
Tssr156609 transcription start site region 156609 18 bp upstream
Tssr159454 transcription start site region 159454 2000 bp upstream
Tssr159455 transcription start site region 159455 1694 bp upstream
Tssr159456 transcription start site region 159456 1575 bp upstream
Tssr159457 transcription start site region 159457 1546 bp upstream
Tssr159458 transcription start site region 159458 1512 bp upstream
Tssr159459 transcription start site region 159459 1420 bp upstream
Tssr159460 transcription start site region 159460 1384 bp upstream
Tssr159461 transcription start site region 159461 1323 bp upstream
Tssr159462 transcription start site region 159462 1291 bp upstream
Tssr159463 transcription start site region 159463 1252 bp upstream
Tssr159464 transcription start site region 159464 1222 bp upstream
Tssr159465 transcription start site region 159465 1202 bp upstream
Tssr159466 transcription start site region 159466 1184 bp upstream
Tssr159467 transcription start site region 159467 1120 bp upstream
Tssr159468 transcription start site region 159468 874 bp upstream
Tssr159469 transcription start site region 159469 809 bp upstream
Tssr159470 transcription start site region 159470 795 bp upstream
Tssr159471 transcription start site region 159471 762 bp upstream
Tssr159472 transcription start site region 159472 736 bp upstream
Tssr159473 transcription start site region 159473 717 bp upstream
Tssr159474 transcription start site region 159474 695 bp upstream
Tssr159475 transcription start site region 159475 648 bp upstream
Tssr159476 transcription start site region 159476 630 bp upstream
Tssr159477 transcription start site region 159477 621 bp upstream
Tssr159478 transcription start site region 159478 600 bp upstream
Tssr159479 transcription start site region 159479 582 bp upstream
Tssr159480 transcription start site region 159480 550 bp upstream
Tssr159481 transcription start site region 159481 491 bp upstream
Tssr159482 transcription start site region 159482 403 bp upstream
Tssr159483 transcription start site region 159483 305 bp upstream
Tssr159484 transcription start site region 159484 278 bp upstream
Tssr159485 transcription start site region 159485 160 bp upstream
Tssr159486 transcription start site region 159486 146 bp upstream
Tssr159487 transcription start site region 159487 64 bp upstream
Tssr159488 transcription start site region 159488 21 bp upstream
Tssr159489 transcription start site region 159489 within coordinates
Tssr159490 transcription start site region 159490 98 bp downstream
Tssr159491 transcription start site region 159491 133 bp downstream
Tssr159492 transcription start site region 159492 184 bp downstream
Tssr159493 transcription start site region 159493 210 bp downstream
Tssr159494 transcription start site region 159494 230 bp downstream
Tssr159495 transcription start site region 159495 348 bp downstream
Tssr159496 transcription start site region 159496 418 bp downstream
Tssr159497 transcription start site region 159497 431 bp downstream
Tssr159498 transcription start site region 159498 443 bp downstream
Tssr159499 transcription start site region 159499 473 bp downstream
Tssr159500 transcription start site region 159500 504 bp downstream
Tssr159501 transcription start site region 159501 519 bp downstream
Tssr159502 transcription start site region 159502 555 bp downstream
Tssr159503 transcription start site region 159503 568 bp downstream
Tssr159504 transcription start site region 159504 647 bp downstream
Tssr159505 transcription start site region 159505 760 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory