rs220379874 SNP Detail

Summary

• ID
  rs220379874
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:110831204 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ACCCTGGCC AGAATAGTGG GTCATGCCAC
  CCCTCAGGCT TTGGGAATTT AAGCCACAGA TCTGTCAGCA TCTCAAGATC CAGAACTGGT
  CAGATAACCT ACTAATCCTC TGATGACGTA GGGATGTATG CTTTATTATT GTTTGGtttt
  R
  agctcggttt catacagctt gagtggcctc aaactcactg catagctaag gataaccttg
  aacttatgat cctcctgcct ctacctcctg agtgctgaga ttccaggcat gtgcacacac
  ccagtttgtg tggtaccggg gaatcaaagc                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323195328	CHEV_9_110904640	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220379874					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:110831204 () rs orientation: forward

Symbol	Name	Function Class
1700061E17Rik	RIKEN cDNA 1700061E17 gene	within coordinates
Gm10030	predicted gene 10030	within coordinates
Rr687275	regulatory region 687275	1945 bp distal
Rr687276	regulatory region 687276	1293 bp proximal
Tssr91675	transcription start site region 91675	239 bp upstream