rs220380116 SNP Detail

Summary

• ID
  rs220380116
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:13303381 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAAGACAC ACGGCGCTTG
  TATATGGGCG CGTCTCTGAA ATCCAGGTAA CATTTTGTTG ATTTTAGCTC CTTAGGAAAC
  AAGCTTTGTT CTTCCATGTC CAAAACTCTT CCTTAGACAA TTTACTCATA AATTACGCCC
  AAACTGGATC GCTCGGACAG ACAGCTCAAC CTTAATTATT TGGATCGGAG ATGCCACCCC
  Y
  AAACAATGTT ATCTCAGTGG GCCCACATTT CAAGCTCTTC TTTATAGACT TAGAATAAGA
  TGCTCAGCCT CTGCAGTGCA CCTATGTCTG TCTGTGCTTT GTCTCCCCCA CCCCTGCCCC
  GCCCTGCAGA GCAGCTCCTA GAGGGTTGCT CACCTAACAC AGAGACAAGC GAACACTGTT
  CAGAACCAGG AGCTTAATTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322505540	CHEV_8_13253381	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220380116					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:13303381 () rs orientation: forward

Symbol	Name	Function Class
Adprhl1	ADP-ribosylhydrolase like 1	within coordinates
Rr175514	regulatory region 175514	620 bp proximal
Rr186316	regulatory region 186316	within coordinates
Tssr80430	transcription start site region 80430	651 bp downstream
Tssr80431	transcription start site region 80431	687 bp downstream
Tssr80432	transcription start site region 80432	723 bp downstream
Tssr80433	transcription start site region 80433	740 bp downstream
Tssr80434	transcription start site region 80434	773 bp downstream
Tssr80435	transcription start site region 80435	795 bp downstream
Tssr80436	transcription start site region 80436	865 bp downstream