rs220382940 SNP Detail

Summary

• ID
  rs220382940
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:97953598 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCAAATGTA CATTTGTGAG
  AGAAGCCACT TTCGCTACTG GATCTACTAC AAGCACTTGT CTCCTTTCCA ATAACAGAAT
  TCCAAACTCA TGTTTTTCCA GGTCATCCAC CTTCTGTCAG GCAGGCACAC AGAATGGATC
  GAAATGTATT GGTTATTGTT CTCAGACTTC TTGGACCCAC CATAAGCAAA CATCCTGGAA
  Y
  GGGTGGCTTA AAATGTGTTT TCTCACAGTA CTGGAAGCTA GAAAGTCCCC GATTCAGGCT
  GATTGTTCCA GAAGCCAATC TCTATGGACA GCTGAGGGCT TCCTGTCACT GTCCTCGCCC
  AGTCTTTCCT CTGTGCCTGC CCAGCCCTGG TGTCTACTCT TCTTATTATT AGGATACTAA
  TACTATTGGT TAATGGCCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324132329	CHEV_12_99225549	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220382940					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:97953598 () rs orientation: forward

Symbol	Name	Function Class
Rr387674	regulatory region 387674	889 bp upstream