rs220386994 SNP Detail

Summary

• ID
  rs220386994
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr14:103217897 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGAAATAG AATCAACAAG
  AAAAATAAAT GTTCAAATCA CTAAAAACTC TACTAGGTAA CTCTTTGGTT AGGTTATACA
  AGTATTAGCA ACTAAGTTTA GGACTCAAAA TAGCTCGATA GACTTCCAGC TGAAGATGGG
  TCTTCTACTA ATCTTGATAA AATCTAAGTT TACACGTACT GTTTCATATT TTTTTAAATG
  Y
  GCACATACTC AAATGGATTA TACAAACTTC CAACTTTCAA ATAATAAATG AGCATGTCCC
  CCTCCTCCCT CCCGCCCTTC CTCCCATCTT TCCTCCCTCC CCAACCCTCC CACAGTCCTA
  GACCTAAGTA AGGGCTGACT GTCCCTACTA ACCACTCCTG CGTTACTGGG TCACTGCCAG
  GTGACTTCTA GAAGCGCTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss392294219	MGP_WTSI_14_103379678	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	T	T	C	C	C	T	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220386994					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	T	T	C	C	C	T	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss392294219	MGP_WTSI_14_103379678	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:103217897 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi6810	CpG island 6810			588 bp proximal
Kctd12	potassium channel tetramerisation domain containing 12			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr404259	regulatory region 404259			551 bp downstream
Rr496944	regulatory region 496944			1768 bp distal
Rr496945	regulatory region 496945			300 bp distal
Rr496946	regulatory region 496946			1091 bp proximal
Rr496947	regulatory region 496947			1268 bp proximal
Rr496948	regulatory region 496948			1462 bp proximal
Tssr126949	transcription start site region 126949			334 bp downstream
Tssr126950	transcription start site region 126950			835 bp upstream
Tssr126951	transcription start site region 126951			906 bp upstream
Tssr126952	transcription start site region 126952			974 bp upstream
Tssr130056	transcription start site region 130056			1890 bp upstream
Tssr130057	transcription start site region 130057			1786 bp upstream
Tssr130058	transcription start site region 130058			695 bp upstream
Tssr130059	transcription start site region 130059			664 bp upstream
Tssr130060	transcription start site region 130060			55 bp downstream
Tssr130061	transcription start site region 130061			997 bp downstream