rs220389298 SNP Detail

Summary

• ID
  rs220389298
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:136189560 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTTATCTTA TTTATTTTGG
  TGTTTATGGT GTGTGCGTGT GCGTGCACAT GTGTGTGCAT CCTTGTGTGT GTGTGTGTGT
  GTGTGTGTGT GTGTGTGCGC GCGCACATGT GTGCATCCCT GTATGTGTGT GTGTGTGCGT
  GCATGTGTGT CCATCCTTGT ATGTGTGTGT ATGTGTGCAC ATGTGTGTGC ATCCTTGTAT
  R
  TGTGTGTGTG TGTGCGCACA TGCATGTGTG TGCAAGGCAT GAGACTGAGG TCTCATTATC
  CCTCCATTAC TCTTCAAATT TTTTCATTGA GGCAGGGTCT CTTAAGCAAA CTCGGAGCTC
  ACCAATATGT CTGGCTAGTC CTGCCTACAA ACCAGTTTGC TCTGAGGATC TTTTCTATCT
  CTGTCTTCTA AGGCTGAACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366851372	MGP_WTSI_5_136636576	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	G	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220389298					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	G	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366851372	MGP_WTSI_5_136636576	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:136189560 () rs orientation: forward

Symbol	Name	Function Class
D5Mit341	DNA segment, Chr 5, Massachusetts Institute of Technology 341	1017 bp proximal
Orai2	ORAI calcium release-activated calcium modulator 2	Intron
Tssr53792	transcription start site region 53792	40 bp downstream
Tssr53793	transcription start site region 53793	242 bp downstream
Tssr53794	transcription start site region 53794	501 bp downstream
Tssr53795	transcription start site region 53795	539 bp downstream
Tssr53796	transcription start site region 53796	586 bp downstream
Tssr53797	transcription start site region 53797	617 bp downstream
Tssr53798	transcription start site region 53798	675 bp downstream
Tssr53799	transcription start site region 53799	689 bp downstream
Tssr53800	transcription start site region 53800	709 bp downstream
Tssr53801	transcription start site region 53801	1316 bp downstream
Tssr53802	transcription start site region 53802	1352 bp downstream