rs220394988 SNP Detail

Summary

• ID
  rs220394988
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:10608502 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACACACACA CACACACACA
  CACACACACA CGTATGCACA TAAAGGGAAA GAGGGAGACC AAGAGAGTTC CATGGAGACT
  CTTTATTCTT TTCTGAATGT CCTCTGGCGT GGCAATGGGC ACCCATTGCC AGGCAGGCCT
  TGTGGCTCAG GAGTGTGTCT GCTTGGGCTC GGGGCTTGGC TGGGCCTCCC CATCCTCGGC
  R
  CTCTCTTGCT TTTCGGGCTC CAGCAGCAGC AGCTTGCCCT TCACCGGGAT TTGCTCCTCT
  TCCTCTTCTT CTTCTTCCTC CTCCTCCTCT TCCTCGTCCT CCTCCTCTTC CTCGCCCTCT
  GATGACAGGG AAAAGTTGTC TTGACTCACA CAGGCCACGA GCTTCTTCAT GGAGGACTCG
  TGGCCACGGC TGTGACCAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss395386240	MGP_WTSI_16_10790731	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220394988					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395386240	MGP_WTSI_16_10790731	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:10608502 () rs orientation: forward

Symbol	Name	Function Class
Gm46563	predicted gene, 46563	within coordinates
Prm2	protamine 2	739 bp downstream
Prm3	protamine 3	within coordinates
Rr511597	regulatory region 511597	1488 bp distal
Rr511598	regulatory region 511598	109 bp proximal
Rr511599	regulatory region 511599	248 bp proximal
Tnp2	transition protein 2	1983 bp upstream
Tssr137053	transcription start site region 137053	795 bp upstream
Tssr137054	transcription start site region 137054	945 bp upstream
Tssr137055	transcription start site region 137055	1163 bp upstream
Tssr137056	transcription start site region 137056	1186 bp upstream
Tssr139949	transcription start site region 139949	1970 bp upstream
Tssr139950	transcription start site region 139950	264 bp downstream
Tssr139951	transcription start site region 139951	303 bp downstream
Tssr139952	transcription start site region 139952	841 bp downstream
Tssr139953	transcription start site region 139953	946 bp downstream
Tssr139954	transcription start site region 139954	995 bp downstream
Tssr139955	transcription start site region 139955	1093 bp downstream
Tssr139956	transcription start site region 139956	1457 bp downstream