rs220404104 SNP Detail

Summary

• ID
  rs220404104
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:92284837 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAGTTAGGA GCCTACTGCT
  GTAATCTCAG TGTGGAAGAA TCTGAGAAAT ATTCCTGCAC ACCATACACT CAACATTGGA
  CAGGTGAAGG AGGAAAGCCG GAGTCTTCGG ATTCCTCCTT ACAGACTAGG GGATTATTTG
  GGTAGAGGTA CTACTGAGCA CGCTAGGGCA CACCGTGGAA GCATACTGAT TTCTTTTTAG
  R
  GGGAGTCTGG GGGAGACATA GGTCTTAATC GTCACATCTG AGACCTATGG GGAATTGAAA
  CCAAGAGAGG CATGAGTCAG TTGGTTTACT AGACTCCCTT TCAGAGTCAA GAAATTTGCA
  AAACCATGTG TACCTGGCAG CCTCATTTGG AAAGAACAAG TATAGCGATT TGGAAATATG
  ACATTCTGCT TGCTAAAACC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss365876647	MGP_WTSI_5_92566004	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220404104					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss365876647	MGP_WTSI_5_92566004	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:92284837 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16052	CpG island 16052	489 bp proximal
Gm71614	predicted gene, 71614	within coordinates
Rr399160	regulatory region 399160	768 bp upstream
Rr614569	regulatory region 614569	1981 bp distal
Rr614570	regulatory region 614570	within coordinates
Rr614571	regulatory region 614571	400 bp proximal
Rr614572	regulatory region 614572	737 bp proximal
Rr614573	regulatory region 614573	979 bp proximal
Tssr47284	transcription start site region 47284	871 bp upstream
Tssr47285	transcription start site region 47285	918 bp upstream
Tssr47286	transcription start site region 47286	962 bp upstream
Tssr51846	transcription start site region 51846	659 bp downstream
Tssr51847	transcription start site region 51847	755 bp downstream
Tssr51848	transcription start site region 51848	791 bp downstream
Uso1	USO1 vesicle docking factor	960 bp upstream