rs220406168 SNP Detail

Summary

• ID
  rs220406168
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30253267 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTGAAGGGTG GGGCAAGTGA GCCGGGAATC TGGGGGAAAG
  GACAAGTGAG TCCCGACGGG CTGTAATGTT CCTAGGGTTG CATATGGTGA TGCTGCATCT
  K
  CAAGAGGGAT CCTGTGATTT GATGAAGGGG GTCTTGGGCA CTCTAAACGA GGGGAAAGTA
  CCCGTAAAGG GCACAGGAGG TCCCATGACC TAAGTAAGA                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322135219	CHEV_7_31338861	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220406168					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30253267 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18808	CpG island 18808	1191 bp distal
Cpgi18809	CpG island 18809	308 bp distal
Cpgi18810	CpG island 18810	384 bp proximal
Hspb6	heat shock protein, alpha-crystallin-related, B6	within coordinates
Lin37	lin-37 DREAM MuvB core complex component	1599 bp downstream
Mir9769	microRNA 9769	938 bp downstream
Proser3	proline and serine rich 3	1543 bp upstream
Rr400242	regulatory region 400242	1350 bp downstream
Tssr65779	transcription start site region 65779	1278 bp downstream
Tssr65780	transcription start site region 65780	570 bp downstream
Tssr65781	transcription start site region 65781	533 bp downstream
Tssr65782	transcription start site region 65782	930 bp upstream
Tssr65783	transcription start site region 65783	1005 bp upstream
Tssr65784	transcription start site region 65784	1029 bp upstream
Tssr65785	transcription start site region 65785	1081 bp upstream
Tssr65786	transcription start site region 65786	1099 bp upstream
Tssr65787	transcription start site region 65787	1193 bp upstream
Tssr71787	transcription start site region 71787	1526 bp upstream
Tssr71788	transcription start site region 71788	1467 bp upstream
Tssr71789	transcription start site region 71789	823 bp downstream
Tssr71790	transcription start site region 71790	935 bp downstream