rs220407251 SNP Detail

Summary

• ID
  rs220407251
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:9067606 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAGCCCCCT CCCTTGTTTA
  TGTCAAAGTT TAATGGAGAT CCACCAAAGC CTTGGGATGC TGGCTCACAA CCTTGAGCCT
  TGTTTTTTTT TCAGCCAGAC GCAGAGCAGC TGAGGAGGCG CTGTGTGTGC TAGCTTTACT
  CTCTGCCACA GACTTTGATG ATGGTTTCAG GAGTGGAGTA GAAATTGGCT GACACGATTT
  Y
  GTGTCCACTC TGAGTCTGGT TTCACTTGTA GATTCCTAGA CATGAATGGG AGAGATCTTC
  ATCTCCTCAG AAGCAGGATC ATAGGCAGTT CTGCTACGGC TCATGCTCAG GAGCACAGGT
  CCTCGTGGGA GGCAAACAGT GATTGTTGCC CGCTCTACTC TGCTCCTCCC CCTCCCCCCC
  ACCCCCATTC CCAAGCCTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss382361418	MGP_WTSI_11_9017609	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220407251					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382361418	MGP_WTSI_11_9017609	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:9067606 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2578	CpG island 2578	746 bp proximal
Rr385585	regulatory region 385585	within coordinates
Rr442635	regulatory region 442635	1109 bp distal
Rr442636	regulatory region 442636	7 bp proximal
Rr442637	regulatory region 442637	912 bp proximal
Tssr3423	transcription start site region 3423	492 bp upstream
Tssr3424	transcription start site region 3424	528 bp upstream
Tssr100322	transcription start site region 100322	346 bp upstream
Tssr100323	transcription start site region 100323	392 bp upstream
Tssr100324	transcription start site region 100324	464 bp upstream
Tssr100325	transcription start site region 100325	930 bp upstream
Tssr100326	transcription start site region 100326	965 bp upstream
Tssr100327	transcription start site region 100327	1013 bp upstream
Tssr100328	transcription start site region 100328	1617 bp upstream
Tssr100329	transcription start site region 100329	1673 bp upstream
Upp1	uridine phosphorylase 1	497 bp upstream