rs220407992 SNP Detail

Summary

• ID
  rs220407992
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:72183136 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATTTTCCAG CTGTGCGTTG
  CAGGTTTCAC TTAATAAACC ACAAACGAGT GGTCGCGCTG AGGTTTTAGC CTGCGCAAGA
  AGATGGTGTT TTCACGACCA ACCTGCATTT GTAACCCGTT AGGAAAGAAA TATGCTAGGA
  AAAAAATGGA CGTTAACCTG CTGCGAGCAT GGAGACTTTT GGCTTCACGA AGAAAAAAAA
  W
  TTTTTTTTTA AATAGTCCGC CATACTTAAA CATTTGGCTT TATTTTCAAG TTTGGACTGA
  ATCATCTAAA TACTTGGACG TCTTTTAGTG CCCTTAACCA TAAATTCACA CGATGGAAGT
  AAGAGTTTGA AGGTACAAAA CCCTTCCCTT GGCATCTGTG TGCTATCTTG TTTTGAGAGA
  TGACTGTACC AACTCAAGTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378015328	MGP_WTSI_9_72123661	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	A	T	A	T	A	T	A	T	T	T	T	T	T	A	T	T	T	T	T	T	T	A	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220407992					SNP	A	A	A	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	A	T	A	T	A	T	A	T	T	T	T	T	T	A	T	T	T	T	T	T	T	A	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378015328	MGP_WTSI_9_72123661	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:72183136 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22014	CpG island 22014	122 bp distal
Gm27253	predicted gene 27253	998 bp upstream
Rr197186	regulatory region 197186	1536 bp distal
Rr206702	regulatory region 206702	within coordinates
Rr368823	regulatory region 368823	312 bp downstream
Tssr85968	transcription start site region 85968	968 bp downstream
Tssr85969	transcription start site region 85969	941 bp downstream
Tssr85970	transcription start site region 85970	904 bp downstream
Tssr85971	transcription start site region 85971	841 bp downstream
Tssr85972	transcription start site region 85972	828 bp downstream
Tssr85973	transcription start site region 85973	355 bp downstream
Zfp280d	zinc finger protein 280D	within coordinates